SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13699

Length: 222 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13699
AATGTATAATAATGGTTCTGCTAGCGGCGTTATTGTCAAGAAAAGCGTCGCAATGGCTCCGGGAGTTATGGAAGTGGACAGTCTGACAGAGGCCGACCTCAAGAAACACGGGCTCCGACATACGAGGAGGACGAAGCTGGTGTGCACAATTGGGCCTGCTTGCTGTGGCTTGGAGCAGCTTGAAGCTCTGGCAGTGGGCGGGATGAACATGGCGAGAATAAA

Ace file of the UniGene biog3_v1.0_unigene13699 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34009	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate kinase isozyme A, chloroplastic n=3 Tax=Ricinus communis RepID=KPYA_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	pyruvate kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.4-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	pyruvate kinase activity	GO:0004743	Molecular Function	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate kinase, beta-barrel insert domain	IPR015806	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NR11

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 73 - 206

Fln protein: MYNNGSASGVIVKKSVAMAPGVMEVDSLTEADLKKHGLRHTRRTKLVCTIGPACCGLEQLEALAVGGMNMARI

Protein Length: 74

Fln nts: AATGTATAATAATGGTTCTGCTAGCGGCGTTATTGTCAAGAAAAGCGTCGCAATGGCTCCGGGAGTTATGGAAGTGGACAGTCTGACAGAGGCCGACCTCAAGAAACACGGGCTCCGACATACGAGGAGGACGAAGCTGGTGTGCACAATTGGGCCTGCTTGCTGTGGCTTGGAGCAGCTTGAAGCTCTGGCAGTGGGCGGGATGAACATGGCGAGAATAAA

Fln Alignment:

biogeco3_mira_c4711___NNGSASGVIVKKSVAMAPGVMEVDSLTEADLKKHGLRHTRRTKLVCTIGPACCGLEQLEALAVGGMNMARI
A9NR11__________________NNGYSNGVIVKKSATMAPAVMEVDSLTEADLKKNGLRHTRRTKLVCTIGPASCGLEQLEALAVGGMNVARI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
10	33		66		0.997456
12	33	33		33	0.997753
13	75		25		0.996473
14		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain