SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13682

Length: 299 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13682
CTGTAAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATCCTGCCTTCAAAGGCATCTCTTACAAGTGCTGGGGTTGATCTGATGAAATTTCAACTTTGGGACTGTAAGGGCTATCATGCTGAAGGCTCCGAAGGAGAAATGCATGGACATAAAAGTTGGCCCTCATTAGGAAGGCCTAACGTTGCTCCTTTCTCAGATGTATTGAGTAATAAAGGCAAGTTTGGGAATGCATATGGATCTGACAAACTAAGGTCAGTGGAGTATACTTGTGAACAATTCTCAAATACAAACACGCCACAT

Ace file of the UniGene biog3_v1.0_unigene13682 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene938	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Transcriptional factor B3; Auxin response factor [Medicago truncatula]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	auxin response	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	68%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	68%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	68%
Blast2go	binding	GO:0005488	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 99 - 920

Fln protein: VRFQKVLQGQEILPSKASLTSAGVDLMKFQLWDCKGYHAEGSEGEMHGHKSWPSLGRPNVAPFSDVLSNKGKFGNAYGSDKLRSVEYTCEQFSNTNTPH

Protein Length: 100

Fln nts: CTGTAAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATCCTGCCTTCAAAGGCATCTCTTACAAGTGCTGGGGTTGATCTGATGAAATTTCAACTTTGGGACTGTAAGGGCTATCATGCTGAAGGCTCCGAAGGAGAAATGCATGGACATAAAAGTTGGCCCTCATTAGGAAGGCCTAACGTTGCTCCTTTCTCAGATGTATTGAGTAATAAAGGCAAGTTTGGGAATGCATATGGATCTGACAAACTAAGGTCAGTGGAGTATACTTGTGAACAATTCTCAAATACAAACACGCCACAT

Fln Alignment:

biogeco3_mira_c4629___RFQKVLQGQEILPSKASLTSAGVDLMKFQLWDCKGY---HAEGSEGEMHGHKSWPSLGRPNVAPFSDVLSNKGKFGNAYGSDKLRSV
B8LRW7__________________RFQKVLQGQEMSPLKTPFRTDIMDLMKYRVCDSKALDTEHEVSGGARRTGHEIWPPSGRTDISPSSDLSCDKRKYGRLYGLETPSSI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
98		75	25		0.996473
99	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain