SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13663

Length: 383 nt

UniGene Fasta

>biog3_v1.0_unigene13663
AATGTGTGCAGGATAACTATGAGAAAGCTGTCTGTCCGGCCCTTGATGGCAAGGGTGCTCCAGATCCACACACAAAGGATGCCCAGATTCCTGTAGCAGAGCTTCCACATTGTCGGAAGTGTAATGGGTTATTAAGACCACATGTCGTTTGGTTTGGTGAATGCCTTGATCCAACTGTTCTAGATCAAGCAGAAAATGCTTTGATTAAGTGTGACCTTTTGCTTGTGGTAGGCACATCTGCAGTTGTGCAGCCGGCAGCAGGCTTTGCACCTTTTGTGCAAGGAGGTGGAGGTGTTGTTGCAGAATTCAATATAGAGGACACACCTATAAGTAGATCTTGCAGATTCAAGTTCCATGGTCCATCTGCGAAAACTCTTCACATT

Ace file of the UniGene biog3_v1.0_unigene13663

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22573	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	NAD-dependent deacetylase sirtuin-5 n=3 Tax=Laurasiatheria RepID=SIRT5_BOVIN	-	-	57%
FL-Next	tr=SIR2 family protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	nad-dependent deacetylase sirtuin-5	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	protein deacetylation	GO:0006476	Biological Process	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	69%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent deacetylase, sirtuin family	IPR003000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SDL4

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 127 - 323

Fln protein: CVQDNYEKAVCPALDGKGAPDPHTKDAQIPVAELPHCRKCNGLLRPHVVWFGECLDPTVLDQAENALIKCDLLLVVGTSAVVQPAAGFAPFVQGGGGVVAEFNIEDTPISRSCRFKFHGPSAKTLHI

Protein Length: 128

Fln nts: AATGTGTGCAGGATAACTATGAGAAAGCTGTCTGTCCGGCCCTTGATGGCAAGGGTGCTCCAGATCCACACACAAAGGATGCCCAGATTCCTGTAGCAGAGCTTCCACATTGTCGGAAGTGTAATGGGTTATTAAGACCACATGTCGTTTGGTTTGGTGAATGCCTTGATCCAACTGTTCTAGATCAAGCAGAAAATGCTTTGATTAAGTGTGACCTTTTGCTTGTGGTAGGCACATCTGCAGTTGTGCAGCCGGCAGCAGGCTTTGCACCTTTTGTGCAAGGAGGTGGAGGTGTTGTTGCAGAATTCAATATAGAGGACACACCTATAAGTAGATCTTGCAGATTCAAGTTCCATGGTCCATCTGCGAAAACTCTTCACATT

Fln Alignment:

biogeco3_mira_c4572___VQDNYEKAVCPALDGKGAPDPHTKDAQIPVAELPHCRKCNGLLRPHVVWFGECLDPTVLDQAENALIKCDLLLVVGTSAVV
A9SDL4__________________VEANRNMPICPALDGKGAPDT-VHEANIPSMQLPRCNKCNGLLRPRVIWFGECLERDVLRRTDDALQGCDLLLVVGTSAVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain