SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13609

Length: 361 nt

UniGene Fasta

>biog3_v1.0_unigene13609
GCAGTTGGTTATTCTAACGCAGAGTACGCGGGGGTGTTGAGAACAGGGGTTTGTTTCTTAGGGTTTGCAGAAATGCATCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGATGAGGAGGAGCAGTTCGAGCGCCTCTCGGACGCGGTGGTGCTGTGCATATTGAACAGAGTGGGGGACATAAAGGCTCTGGGGCGATGCTGCGTGGTGTCGCGGAGGTTCAATGCTCTGGTGCCGCAGGTGGAAAACGTGGTGGTGAAGGTCGATTGCGTCATATCGGGTGAAGATGGCGGCGGCCTTAATGTGAAGGGGAAGGGAATACTCACACATT

Ace file of the UniGene biog3_v1.0_unigene13609

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10876	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	8.0e-21	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	f-box family protein	-	-	5.93845e-35	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	5.93845e-35	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 96 - 348

Fln protein: MHLELTLAAEEIVVDVAAVAAEEDEEEQFERLSDAVVLCILNRVGDIKALGRCCVVSRRFNALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTH

Protein Length: 97

Fln nts: GCAGTTGGTTATTCTAACGCAGAGTACGCGGGGGTGTTGAGAACAGGGGTTTGTTTCTTAGGGTTTGCAGAA_-_ATGCATCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGATGAGGAGGAGCAGTTCGAGCGCCTCTCGGACGCGGTGGTGCTGTGCATATTGAACAGAGTGGGGGACATAAAGGCTCTGGGGCGATGCTGCGTGGTGTCGCGGAGGTTCAATGCTCTGGTGCCGCAGGTGGAAAACGTGGTGGTGAAGGTCGATTGCGTCATATCGGGTGAAGATGGCGGCGGCCTTAATGTGAAGGGGAAGGGAATACTCACACATT

Fln Alignment:

biogeco3_mira_c4353___ERLSDAVVLCILNRVGDIKALGRCCVVSRRFNALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTH
D5A9D5__________________DRIPDSLLLLIFNKVADIKALGRCCAVSKRFNFLVPQVENVVVKVDCVISGED-GGLNAKGKGIIGH

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
100	25		75		0.996473
104			75	25	0.996473
185		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain