SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13576

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene13576
GGCAAGAATTACTATCACCGATTGGGCAATGTCTTGGAAGCGCGGTTATTTGCTCTATGGGCCTCCTGGTACAGGGAAATCCAGCATGATTGCAGCCATGGCTAATTACTTGCATTACAATATCTATGACCTGGAATTGACCAAGGTGAATGATAATTCGGAGCTGAGGATGCTTTTGATGCAGACAAGCAATAAATCTATTATTGTAATTGAGGATATTGATTGTTCTTTGGATCTGTCAAGGCA

Ace file of the UniGene biog3_v1.0_unigene13576

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3695	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0465 ATP-dependent Zn proteases	-	-	5.0e-24	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	atp binding	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	66%
Blast2go	Thiamine metabolism	00730	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	66%
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-
Sma3	ATPase, AAA-type, core	IPR003959	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKR9

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 81 - 550

Fln protein: ARITITDWAMSWKRGYLLYGPPGTGKSSMIAAMANYLHYNIYDLELTKVNDNSELRMLLMQTSNKSIIVIEDIDCSLDLSR

Protein Length: 82

Fln nts: GGCAAGAATTACTATCACCGATTGGGCAATGTCTTGGAAGCGCGGTTATTTGCTCTATGGGCCTCCTGGTACAGGGAAATCCAGCATGATTGCAGCCATGGCTAATTACTTGCATTACAATATCTATGACCTGGAATTGACCAAGGTGAATGATAATTCGGAGCTGAGGATGCTTTTGATGCAGACAAGCAATAAATCTATTATTGTAATTGAGGATATTGATTGTTCTTTGGATCTGTCAAGGCA

Fln Alignment:

biogeco3_mira_c4203___SWKRGYLLYGPPGTGKSSMIAAMANYLHYNIYDLELTKVNDNSELRMLLMQTSNKSIIVIEDIDCSLDLSR
B8LKR9__________________AWKRGYLLYGPPGTGKSSMIAAMANYLHYNIYDLELTKVNDNSELRMLLMQTSNKSIIVIEDIDCSLDLSR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
29	66		33		0.997476
82		75		25	0.996473
230	25			75	0.996481
232	25			75	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain