SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13572

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13572
AATGTCTGAGAATTGCCATGGTGGAAGCTGTGAGGACCAAAGAATTTGTTTACAATGAAGATCGGCATCGCTGGGACGGCACCAGCACTGCGCCGGAAGCTGCCGTTATTGTATTTGTTAATTCCAAGAGCGGAGGACGTCGAGGCCCTACGTTGAAGGCTCGGCTTCAGGAACTTATCAGCAAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTACATTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGAACATT

Ace file of the UniGene biog3_v1.0_unigene13572 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene943	3/4
SustainPine v2.0	sp_v2.0_unigene8555	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	diacylglycerol kinase 3 [Arabidopsis thaliana] gb\|AAL57635.1\| At2g18730/MSF3.11 [Arabidopsis thaliana] gb\|AAM98254.1\| At2g18730/MSF3.11 [Arabidopsis thaliana] gb\|AEC06799.1\| diacylglycerol kinase 3 [Arabidopsis thaliana]	-	-	58%
FL-Next	sp=Diacylglycerol kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	diacylglycerol kinase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	75%
Blast2go	Glycerophospholipid metabolism	00564	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Phosphatidylinositol signaling system	04070	75%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	75%
Blast2go	leaf development	GO:0048366	Biological Process	75%
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	75%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39017

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 144 - 728

Fln protein: CLRIAMVEAVRTKEFVYNEDRHRWDGTSTAPEAAVIVFVNSKSGGRRGPTLKARLQELISKEQVFDLSEVKPSDFLRHGLGCLEKLASFGDHCAKETRDRIRIIAAGGDGTVGWILGSIVELHLESHKRIPPVGIIPLGTGNEH

Protein Length: 145

Fln nts: AATGTCTGAGAATTGCCATGGTGGAAGCTGTGAGGACCAAAGAATTTGTTTACAATGAAGATCGGCATCGCTGGGACGGCACCAGCACTGCGCCGGAAGCTGCCGTTATTGTATTTGTTAATTCCAAGAGCGGAGGACGTCGAGGCCCTACGTTGAAGGCTCGGCTTCAGGAACTTATCAGCAAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTACATTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGAACATT

Fln Alignment:

biogeco3_mira_c4184___VIVFVNSKSGGRRGPTLKARLQELISKEQVFDLSEVKPSDFLRHGLGCLEKLASFGDHCAKETRDRIRIIAAGGDGTVGWILGSIVELHLESHKRIPPVGIIPLGTGNE
Q39017__________________LLVFINKKSGAQRGDSLRQRLHLHLNPVQVFELSSVQGPEV---GLFLFRKVPHF------------RVLVCGGDGTAGWVLDAIEKQNFISP---PAVAILPAGTGND

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
82	33			66	0.997467
83	33			66	0.997464
84		66		33	0.997467
85		66	33		0.997467
86		66		33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain