SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13523

Length: 331 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13523
ATTTTGGTCAGATCAAAGAATACCTCCAAGGGTGCAGCATTTCTTCCCAAGGTTCTACGGTAGAACTTCCATACAAGCTTCCGATGGTGGGATGCGTGACCATGCTGTCATTGAGGATTTAACGTATCAGTTTCAGCATCCATCAATCATCGATATTAAGATGGGCTCACGGACATGGTATCCAGGGGCAAGTGAGGAGTACATTAAGAAATGCTTATCTAAAGATAGAGAAACCTCTTCTTTGCTTCTTGGTTTCCGCATATCTGGGATGCAGGTTTATGAATCACTTGAAAAGCCCACCTGGAAGGCAGACAAGAATTGGTGCAAAAGG

Ace file of the UniGene biog3_v1.0_unigene13523 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9816	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Inositol hexaphosphate kinase, putative n=1 Tax=Ricinus communis RepID=B9RA37_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	inositol polyphosphate multikinase alpha	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-trisphosphate 3-kinase.	EC:2.7.1.127	-	0.0	67%

Source	KEGGs	Term	Type	Identity
Blast2go	Inositol phosphate metabolism	00562		67%
Blast2go	Metabolic pathways	01100		67%
Blast2go	Phosphatidylinositol signaling system	04070		67%
Blast2go	Inositol-polyphosphate multikinase.	EC:2.7.1.151	-	67%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Inositol phosphate metabolism	00562		0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol hexakisphosphate biosynthetic process	GO:0010264	Biological Process	67%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	67%
Blast2go	pollen tube growth	GO:0009860	Biological Process	67%
Blast2go	pollen germination	GO:0009846	Biological Process	67%
Blast2go	inositol-1,4,5-trisphosphate 3-kinase activity	GO:0008440	Molecular Function	67%
Blast2go	inositol-1,4,5-trisphosphate 6-kinase activity	GO:0000823	Molecular Function	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol polyphosphate kinase	IPR005522	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAN9

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 110 - 321

Fln protein: FWSDQRIPPRVQHFFPRFYGRTSIQASDGGMRDHAVIEDLTYQFQHPSIIDIKMGSRTWYPGASEEYIKKCLSKDRETSSLLLGFRISGMQVYESLEKPTWKADKNWCKR

Protein Length: 111

Fln nts: ATTTTGGTCAGATCAAAGAATACCTCCAAGGGTGCAGCATTTCTTCCCAAGGTTCTACGGTAGAACTTCCATACAAGCTTCCGATGGTGGGATGCGTGACCATGCTGTCATTGAGGATTTAACGTATCAGTTTCAGCATCCATCAATCATCGATATTAAGATGGGCTCACGGACATGGTATCCAGGGGCAAGTGAGGAGTACATTAAGAAATGCTTATCTAAAGATAGAGAAACCTCTTCTTTGCTTCTTGGTTTCCGCATATCTGGGATGCAGGTTTATGAATCACTTGAAAAGCCCACCTGGAAGGCAGACAAGAATTGGTGCAAAAGG

Fln Alignment:

biogeco3_mira_c3948___FWSDQRIPPRVQHFFPRFYGRTSIQASDGG-MRDHAVIEDLTYQFQHPSIIDIKMGSRTWYPGASEEYIKKCLSKDRETSSLLLGFRISGMQVYESLEKPTWKADKNWCK
D5AAN9__________________FWSDPRIPPRVQHFFPRFYGRTSVQASDGGGMRDHAVIEDLTYQFQHPSIIDIKMGSRTWYPGASEEYIKKCISKDRETSSSLLGFRISGMQVYESPEKPTWKADKNWCK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
276	33	66			0.997459
277			66	33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain