SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13520

Length: 303 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13520
AATGTATTTCTGCATTTCACCTTCATTGCGGTGGGCGTCGTTGCATTCTGCAACAAAATGTAAAGGGCAAATTTCGATGACCAGACCGCGCAATTTTATGCAGAGTGATACGGATTTCGCCATCCTTCTTACAAATAAGTCGAACATTGAGATACGCAATAAAAGTAGGCTTACAACTCATGCACAATCTTATGAGGATAGAATGTCGGTGTCCTTAAATGACAAGCCCGAAAGGACGTTGAATATTAAGGAGGAAGATGCAGATGATGGGGAAGATTCTGGCTACGGCGATCTCAGTACATT

Ace file of the UniGene biog3_v1.0_unigene13520 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1363	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein era, putative n=1 Tax=Ricinus communis RepID=B9S6C9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	gtpase era-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	83%
Blast2go	ribosomal small subunit biogenesis	GO:0042274	Biological Process	83%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	83%
Blast2go	SSU rRNA binding	GO:0070181	Molecular Function	83%
Blast2go	GTPase activity	GO:0003924	Molecular Function	83%
Blast2go	GTP binding	GO:0005525	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3		IPR002917	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8Y1

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 100 - 324

Fln protein: MYFCISPSLRWASLHSATKCKGQISMTRPRNFMQSDTDFAILLTNKSNIEIRNKSRLTTHAQSYEDRMSVSLNDKPERTLNIKEEDADDGEDSGYGDLST

Protein Length: 101

Fln nts: AATGTATTTCTGCATTTCACCTTCATTGCGGTGGGCGTCGTTGCATTCTGCAACAAAATGTAAAGGGCAAATTTCGATGACCAGACCGCGCAATTTTATGCAGAGTGATACGGATTTCGCCATCCTTCTTACAAATAAGTCGAACATTGAGATACGCAATAAAAGTAGGCTTACAACTCATGCACAATCTTATGAGGATAGAATGTCGGTGTCCTTAAATGACAAGCCCGAAAGGACGTTGAATATTAAGGAGGAAGATGCAGATGATGGGGAAGATTCTGGCTACGGCGATCTCAGTACATT

Fln Alignment:

biogeco3_mira_c3935___YFCISPSLRWASLHSATKCKGQISMTRPRNFMQSDTDFAILLTNKSNIEIRNKSRLTTHAQSYEDRMSVSLNDKPERTLNIKEEDADDGEDSGYGDLS
D5A8Y1__________________YFCILPLLQRASLHPLTKCKRKISVTRRRNFMQSDKDFSVPLTNKSKTEIRDKTRVSPHAQSSEDRVSVSLNDKPERMLNVKEEGADNGGDYDYGDLS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
142	25	75			0.996473
143	25			75	0.996475
145			25	75	0.996475
198	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain