SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13519

Length: 488 nt

UniGene Fasta

>biog3_v1.0_unigene13519
AATGTAGGGAAGCTAACCACTGCTCGAGAACTCTGCGACTATGATTTTACTGATGCTGGTGCAGAGGTGGAACTGCGAATCCCATTTCCAGCAGAAACTAGTCCGGATGCTGATGAGGTCTTTGTGAATGTACAAGATACTTCTCTTGTTATTACAGTCAAGATCCGCGGGGAAGAAAGAGTTTTGTTGTCCATTGACAGGCTTTATGGCCAGATAAAACCTGCAGAATCTGCCTGGTGTATTGATGAAAACGAAGTTGTGGTGAGTCTCAAGAAGAGTGATGTAGATGTGAAATGGCCAGACATTCTGGAGGCATGGCACTCCCTGTCTATAGGAGTTTCAGAACTGTTAAAAGGGACATCTGTGTACCTTGTTGGAGATTCCTCGGAAATCAATTGGGCGGTTGCTAGAGAACTGGCACTTGGTTTAAAGTATGCTCCTCTTTGGACAGGCCAATTGTTGGAGGAAGTGACAAAAAAGAGTACATT

Ace file of the UniGene biog3_v1.0_unigene13519

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1806	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ10_RICCO	-	-	50%
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	48%
Blast2go	shikimate kinase-like protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Shikimate kinase.	EC:2.7.1.71	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	73%
Blast2go	Biosynthesis of phenylpropanoids	01061	73%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	73%
Blast2go	Biosynthesis of plant hormones	01070	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	shikimate kinase activity	GO:0004765	Molecular Function	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	CS domain	IPR017447	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RZ10

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 162 - 382

Fln protein: NVGKLTTARELCDYDFTDAGAEVELRIPFPAETSPDADEVFVNVQDTSLVITVKIRGEERVLLSIDRLYGQIKPAESAWCIDENEVVVSLKKSDVDVKWPDILEAWHSLSIGVSELLKGTSVYLVGDSSEINWAVARELALGLKYAPLWTGQLLEEVTKKST

Protein Length: 163

Fln nts: AATGTAGGGAAGCTAACCACTGCTCGAGAACTCTGCGACTATGATTTTACTGATGCTGGTGCAGAGGTGGAACTGCGAATCCCATTTCCAGCAGAAACTAGTCCGGATGCTGATGAGGTCTTTGTGAATGTACAAGATACTTCTCTTGTTATTACAGTCAAGATCCGCGGGGAAGAAAGAGTTTTGTTGTCCATTGACAGGCTTTATGGCCAGATAAAACCTGCAGAATCTGCCTGGTGTATTGATGAAAACGAAGTTGTGGTGAGTCTCAAGAAGAGTGATGTAGATGTGAAATGGCCAGACATTCTGGAGGCATGGCACTCCCTGTCTATAGGAGTTTCAGAACTGTTAAAAGGGACATCTGTGTACCTTGTTGGAGATTCCTCGGAAATCAATTGGGCGGTTGCTAGAGAACTGGCACTTGGTTTAAAGTATGCTCCTCTTTGGACAGGCCAATTGTTGGAGGAAGTGACAAAAAAGAGTACATT

Fln Alignment:

biogeco3_mira_c3933___TTARELCDYDFTDAGAEVELRIPFPAETSPDADEVFVNVQDTSLVITVKIRGEERVLLSIDRLYGQIKPAESAWCIDENEXXXXXXXXXXXXXWPDILEAWHSLSIGVSELLKGTSVYLVGDSSEINWAVARELALGLKYAPLWTGQLLEEVTKKS
B9RZ10__________________STATTSTNYEFSDGSSEVELRLPLGSQDYESGKDIFVDADGTSLIVRVKRSGSFTTLIQTNYLFDKIKPAETIWYIDDDQLVINLKKQDPELKWPDIVESWESLTAGAMQLLKGTSIYIVGDSTEINQKVARELAGGLGYTPLDTQELLETYTKQT

SNPs (tot: 4)

Position	A %	G %	T %	Probability
169	33	66		0.997453
170	33	66		0.997453
171		66	33	0.997453
173	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain