SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13516

Length: 247 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13516
AAGGTCAAGCTTCCGAGAATACAGTAAACGGACAAGCACCAGCAACTGAAAATAGGGAAAATAGAGATCCGGACGTGGAGGCTGTAGCTCAGCAGATGGGACTCATTAACTGTTACCACAGATGTTTCTGTTTCTGCCTCTTCAGAGGAGGCAAATCCCGATAGAATTGATCTGGATAAACGCATTAGAGCATTGAAGAAAAGATTCGTCTGACAGAGTCACAACAAGCTTCTATGGCTGGTGAAGG

Ace file of the UniGene biog3_v1.0_unigene13516 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6328	7/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	partner of Y14-mago [Arabidopsis thaliana] ref\|NP_849639.1\| partner of Y14-mago [Arabidopsis thaliana] ref\|NP_001031023.1\| partner of Y14-mago [Arabidopsis thaliana] gb\|AAF16626.1\|AC011661_4 T23J18.7 [Arabidopsis thaliana] gb\|AAO42233.1\| unknown protein [	-	-	9.0e-26	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	partner of y14-mago	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	66%
Blast2go	trichome branching	GO:0010091	Biological Process	66%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	nucleolus	GO:0005730	Cellular Component	66%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exon junction complex, Pym	IPR015362	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSR8

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 81 - 228

Fln protein: GQASENTVNGQAPATENRENRDPDVEAVAQQMGLINCYHRCFCFCLFRGGKSR*N*SG*TH*SIEEKIRLTESQQASMAGE

Protein Length: 82

Fln nts: AAGGTCAAGCTTCCGAGAATACAGTAAACGGACAAGCACCAGCAACTGAAAATAGGGAAAATAGAGATCCGGACGTGGAGGCTGTAGCTCAGCAGATGGGACTCATTAACTGTTACCACAGATGTTTCTGTTTCTGCCTCTTCAGAGGAGGCAAATCCCGATAGAATTGATCTGGATAAACGCATTAGAGCATTGAAGAAAAGATTCGTCTGACAGAGTCACAACAAGCTTCTATGGCTGGTGAAGG

Fln Alignment:

biogeco3_mira_c3921___GQASENTVNGQAPATENRENRDPDVEAVAQQMGLINCYHRCFCFCLFRGGKSR*N*SG*TH*SIEEKIRLTESQQASMAGE
A9NSR8__________________GQASENTVNGQAAATENRANRDPDVEAVAQQMGSLTVTSEVSVSVSSEQANPERMDLDKRIRALKKKIRLTESQQASMAGE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
208	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain