SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13492

Length: 490 nt

UniGene Fasta

>biog3_v1.0_unigene13492
GGGTACAATCTCTCCTCTTCTTGGCAATCTCTCGTTTCTCGTAAGACTCGACCTTAGCAATAACAGCTTTCATGGCCCCATACCCTATCAATTGGGAAACCTCTTTCGTTTACATGACCTTTTCCTCAGTATGAATCAATTCGAAGGTTCCATTCCACCCACCCTGGGTGGATGTCGTAGTTTGACGACCTTGAATTTTACCCAAAATAATCTAGGAGGAAACATTCCCTCAGAACTGTGTGTTCTCTCCAAATTACAAAACTATGACTTAGGGCACAACTATTTGTCAGGTAAAATTCCCGCCTGCTTGGGAAACATGTCTTCTTTGGTCTTTGTAAGTTTTATAGATAACAACCTTCATGGCCTCCTTCCTTCCGATTTGGGTATGCTAAGTCTTCTCCGCAAATTCTATGTTTGGAATAACTGTCTTACAGGGCAAATCCCTTCTTCCTTTTCAAATTGCACAAATCTCCAAATTTTGTTTTTAAGT

Ace file of the UniGene biog3_v1.0_unigene13492

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36620	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] emb\|CAB61984.1\| receptor-kinase like protein [Arabidopsis thaliana] gb\|AAL24086.1\| putative receptor kinase [Arabidopsis thaliana] gb\|AAN71975.1\| putative receptor kinase [Arabidopsis	-	-	6.0e-38	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 337 aas, your sequence is shorter than subject: 163 - 551

Fln protein: GTISPLLGNLSFLVRLDLSNNSFHGPIPYQLGNLFRLHDLFLSMNQFEGSIPPTLGGCRSLTTLNFTQNNLGGNIPSELCVLSKLQNYDLGHNYLSGKIPACLGNMSSLVFVSFIDNNLHGLLPSDLGMLSLLRKFYVWNNCLTGQIPSSFSNCTNLQILFLS

Protein Length: 164

Fln nts: GGGTACAATCTCTCCTCTTCTTGGCAATCTCTCGTTTCTCGTAAGACTCGACCTTAGCAATAACAGCTTTCATGGCCCCATACCCTATCAATTGGGAAACCTCTTTCGTTTACATGACCTTTTCCTCAGTATGAATCAATTCGAAGGTTCCATTCCACCCACCCTGGGTGGATGTCGTAGTTTGACGACCTTGAATTTTACCCAAAATAATCTAGGAGGAAACATTCCCTCAGAACTGTGTGTTCTCTCCAAATTACAAAACTATGACTTAGGGCACAACTATTTGTCAGGTAAAATTCCCGCCTGCTTGGGAAACATGTCTTCTTTGGTCTTTGTAAGTTTTATAGATAACAACCTTCATGGCCTCCTTCCTTCCGATTTGGGTATGCTAAGTCTTCTCCGCAAATTCTATGTTTGGAATAACTGTCTTACAGGGCAAATCCCTTCTTCCTTTTCAAATTGCACAAATCTCCAAATTTTGTTTTTAAGT

Fln Alignment:

biogeco3_mira_c3782___GTISPLLGNLSFLVRLDLSNNSFHGPIPYQLGNLFRLHDLFLSMNQFEGSIPPTLGGCRSLTTLNFTQN-NLGGNIPSELCVLSKLQNYDLGHNYLSGKIPACLGNMSSLVFVSFIDNNLHXXXXXXXXXXXXXRKFYVWNNCLTGQIPSSFSNCTNL
B8LRW5__________________GPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
213	25		75	0.99649
217		75	25	0.99649
395	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain