SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13463

Length: 362 nt

UniGene Fasta

>biog3_v1.0_unigene13463
GGCAAATGCACTCAAACATCGACCCTTTCTTCTCCAGTATATCATCTCATCTAAGATTAAGAATCCAAATCAGTTGGAAAAGGCTTTATCTTTTCTATGTATGTTGGTCCTGAAAGTTTGGAGGTGGATGACTTTGAAGAATCTTGTGGCATAGGAGTTGAGGTTTCTGTTGGAGACATCAAGGCTGCAGTAGATGAGGTGGTGAATGGGAACATCGAGGCCATATTAGCACAGCGTTATCGAATAAATGTTGGAAATTTGTATGGCCAAGTTCGTAAGCTACAGCCATGGGCAGATGCAAGAGTGGTTAAGGAAACAATGGACACCAAGCTTCATGAGTTACTTGGGGAAAAGACAACATT

Ace file of the UniGene biog3_v1.0_unigene13463

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18180	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Glutaminyl-tRNA synthetase; AltName: Full=Glutamine--tRNA ligase; Short=GlnRS emb\|CAA62901.1\| tRNA-glutamine synthetase [Lupinus luteus]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	glutaminyl-trna synthetase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	84%
Blast2go	ovule development	GO:0048481	Biological Process	84%
Blast2go	tRNA aminoacylation	GO:0043039	Biological Process	84%
Blast2go	ligase activity	GO:0016874	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib	IPR004514	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	IPR007639	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	IPR007638	-	-
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ22

Fln msg: Overlapping hits, possible frame ERROR between 97 and 79, Distance to subject end: 606 aas, your sequence is shorter than subject: 120 - 832

Fln protein: ANALKHRPFLLQYIISSKIKNPNQLxxxxxxxxYVGPESLEVDDFEESCGIGVEVSVGDIKAAVDEVVNGNIEAILAQRYRINVGNLYGQVRKLQPWADARVVKETMDTKLHELLGEKTT

Protein Length: 121

Fln nts: GGCAAATGCACTCAAACATCGACCCTTTCTTCTCCAGTATATCATCTCATCTAAGATTAAGAATCCAAATCAGTTGxxxxxxxxxxxxxxxxxxxxxxxxTATGTTGGTCCTGAAAGTTTGGAGGTGGATGACTTTGAAGAATCTTGTGGCATAGGAGTTGAGGTTTCTGTTGGAGACATCAAGGCTGCAGTAGATGAGGTGGTGAATGGGAACATCGAGGCCATATTAGCACAGCGTTATCGAATAAATGTTGGAAATTTGTATGGCCAAGTTCGTAAGCTACAGCCATGGGCAGATGCAAGAGTGGTTAAGGAAACAATGGACACCAAGCTTCATGAGTTACTTGGGGAAAAGACAACATT

Fln Alignment:

biogeco3_mira_c3606___ANALKHRPFLLQYIISSKIKNPNQLExxxxxxMYVGPESLEVDDFEESCGIGVEVSVGDIKAAVDEVVNGNIEAILAQRYRINVGNLYGQVRKLQPWADARVVKETMDTKLHELLGEKT
B8LQ22__________________ANALKHRPFLLQYIISSKIKNPNQLExxxxxxSNTGPESLEVDDFEESCGIGVEVSVGDIKTAVDEVANENMDAILAQRYRINAGNLYGQVRKLQPWADAKVVKEIMDTKLHELLGEKT

SNPs (tot: 5)

Position	A %	G %	T %	Probability
140	25	75		0.996473
141	75		25	0.996473
142	75	25		0.996473
250	75		25	0.996473
263	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain