SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13452

Length: 310 nt

UniGene Fasta

>biog3_v1.0_unigene13452
GTGGTATCTAAAGATCAGGTAGAAGCAGTAATTGATGCAATCATTGATGAGGCAAGAACTGGAGAAATTGGAGATGGCAAAATATTTGTGGTTCCAGTTGCAGATGTCATTCGTGTGAGAACAGGTGAGCGTGGACTTGAAGCAGAGAGAATGGCTGGTGGACGATCAGAGATACTTACAGGTGTACATCAAGACGTTACAGACAGCAACTAAATCACTTTTAGACACTATAATTGAGTCAAAGCCTGATGCTTGAGTATGGTGCACAGGAGTAAATAGATTGAGATATGGTGATTGGATGGCTTTACAT

Ace file of the UniGene biog3_v1.0_unigene13452

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17293	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	PII-like protein n=1 Tax=Pinus pinaster RepID=Q70YP6_PINPS	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	pii protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of fatty acid biosynthetic process	GO:0042304	Biological Process	85%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	85%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	85%
Blast2go	response to light stimulus	GO:0009416	Biological Process	85%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	85%
Blast2go	acetylglutamate kinase regulator activity	GO:0010307	Molecular Function	85%
Blast2go	oxygen transporter activity	GO:0005344	Molecular Function	85%
Blast2go	oxygen binding	GO:0019825	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	85%
Blast2go	cell wall	GO:0005618	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	Nitrogen regulatory protein PII, conserved site	IPR017918	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ11

Fln msg: your sequence is shorter than subject: 71 - 175

Fln protein: VVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEILTGVHQDVTDSN*

Protein Length: 72

Fln nts: GTGGTATCTAAAGATCAGGTAGAAGCAGTAATTGATGCAATCATTGATGAGGCAAGAACTGGAGAAATTGGAGATGGCAAAATATTTGTGGTTCCAGTTGCAGATGTCATTCGTGTGAGAACAGGTGAGCGTGGACTTGAAGCAGAGAGAATGGCTGGTGGACGATCAGAGATACTTACAGGTGTACATCAAGACGTTACAGACAGCAACTAA___ATCACTTTTAGACACTATAATTGAGTCAAAGCCTGATGCTTGAGTATGGTGCACAGGAGTAAATAGATTGAGATATGGTGATTGGATGGCTTTACAT

Fln Alignment:

biogeco3_mira_c3548___VVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEILTG
A9NZ11__________________VVSKDQVEAVIDTIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSDILSG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
26	33	66			0.997476
70	20			80	0.995493
73			80	20	0.995493
80	40	60			1.0
173	20		80		0.995493
175			80	20	0.995493
176	80		20		0.995493
200		75	25		0.996473
215		75		25	0.996473
244	33		66		0.997458
245		33		66	0.997453
246		66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain