SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13432

Length: 361 nt

UniGene Fasta

>biog3_v1.0_unigene13432
AATGTAATGTGGAGATTGTGCGTGCTGTAAATCCAAGAAGACTAATCTGTGTGAGAAGCTCAATATTGTTAGAAATGATGTCAAGGAACCGCGCTTCTCAATTAGGGGAAAGCCCGTTTACCATTTCATGAATACCTCCACATTTAGCGAGTTCACAGTCGTTGACTCTAAATGCGTTGCTAAAATCAATCCAGAGACCCCTTTGGACAAAGCATGCCTGTTTGGCTGCGGTATAACCACAGGAGTTGGAGCTGTTTTATACGCAGCTGATGTTGAGCCCGGATCAACTGTGGCCATTTTTGGCCTTGGCACTGTTGGCCTGGCAGTTGCAGAGGGTTCAAGGATCAGAGGTGCATACATT

Ace file of the UniGene biog3_v1.0_unigene13432

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17395	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Alcohol dehydrogenase class-3; AltName: Full=Alcohol dehydrogenase class-III; AltName: Full=Glutathione-dependent formaldehyde dehydrogenase; Short=FALDH; Short=FDH; Short=GSH-FDH; AltName: Full=S-(hydroxymethyl)glutathione dehydrogenase	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	alcohol dehydrogenase-like 3	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	formaldehyde metabolic process	GO:0046292	Biological Process	72%
Blast2go	heat acclimation	GO:0010286	Biological Process	72%
Blast2go	cell death	GO:0008219	Biological Process	72%
Blast2go	seed development	GO:0048316	Biological Process	72%
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase activity	GO:0051903	Molecular Function	72%
Blast2go	S-nitrosoglutathione reductase activity	GO:0080007	Molecular Function	72%
Blast2go	peroxisome	GO:0005777	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 156 aas, your sequence is shorter than subject: 120 - 405

Fln protein: M*CGDCACCKSKKTNLCEKLNIVRNDVKEPRFSIRGKPVYHFMNTSTFSEFTVVDSKCVAKINPETPLDKACLFGCGITTGVGAVLYAADVEPGSTVAIFGLGTVGLAVAEGSRIRGAYI

Protein Length: 121

Fln nts: AATGTAATGTGGAGATTGTGCGTGCTGTAAATCCAAGAAGACTAATCTGTGTGAGAAGCTCAATATTGTTAGAAATGATGTCAAGGAACCGCGCTTCTCAATTAGGGGAAAGCCCGTTTACCATTTCATGAATACCTCCACATTTAGCGAGTTCACAGTCGTTGACTCTAAATGCGTTGCTAAAATCAATCCAGAGACCCCTTTGGACAAAGCATGCCTGTTTGGCTGCGGTATAACCACAGGAGTTGGAGCTGTTTTATACGCAGCTGATGTTGAGCCCGGATCAACTGTGGCCATTTTTGGCCTTGGCACTGTTGGCCTGGCAGTTGCAGAGGGTTCAAGGATCAGAGGTGCATACATT

Fln Alignment:

biogeco3_mira_c3433___CGDCACCKSKKTNLCEKLNIVRNDVKEPRFSIRGKPVYHFMNTSTFSEFTVVDSKCVAKINPETPLDKACLFGCGITTGVGAVLYAADVEPGSTVAIFGLGTVGLAVAEGSRIRGA
A9NZ44__________________CGDCACCKSNKTNLCEKFNIVRNDVKEPRFSIRGKAVHHFMNTSTFSEFTVVDSKCVAKINPETPLDKACLFGCGITTGVGAALYTADIEPGSTVAIFGLGTVGLAVAEGARIRGA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
181		40		60	1.0
263	20		80		0.995493
267		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain