SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13428

Length: 513 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13428
CGAGGGCTAGCTGNGAAAATGATGTGTGAATCGCAGCCTCGGGAAGTCTGGAGAACGTCCCGGGATTTGATCTCCGTACCTTCTGACAAGGAGGAGCCGACCTCCAGAGCATCAAAGAAAATTAACAAGACTGGCGCCCTGCAGTATTTGCATTCCCAGGATGCAGGGGAAGACGGGAGGGAGCGCATGAGGTGTTCATCGGTGGTTGTCCAGCGAGTCGAGGCACCGGTGAGCGTTGTCTGGTCGCTGGTTCGACGCTTCGATGAGCCCCAAATTTACAAGCACTTTGTCCGCAAGTGCTCCATACGAGGTGAGGGGGATCTGAAGGTAAAGGTCGGCTGCCTCAGAGAGGTTCTAGTCGTCTCTGGTCTCCCTGCGGCCAACAGCACCGAAAGGCTCGACATTCTGGATGAGGAGCAGCATATTCTGAGCTTCAGCATCGTTGGGGGAGATCACAGGCTGAGCAATTATCGATCCATTACCAATCTGCAAGAAACGGTCATAAATGACATT

Ace file of the UniGene biog3_v1.0_unigene13428 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28533	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	abscisic acid receptor pyl4	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	79%
Blast2go	receptor activity	GO:0004872	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Pyrokinin, conserved site	IPR001484	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Streptomyces cyclase/dehydrase	IPR005031	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM9

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 165 - 213

Fln protein: MMCESQPREVWRTSRDLISVPSDKEEPTSRASKKINKTGALQYLHSQDAGEDGRERMRCSSVVVQRVEAPVSVVWSLVRRFDEPQIYKHFVRKCSIRGEGDLKVKVGCLREVLVVSGLPAANSTERLDILDEEQHILSFSIVGGDHRLSNYRSITNLQETVINDI

Protein Length: 166

Fln nts: CGAGGGCTAGCTGtGAAA_-_ATGATGTGTGAATCGCAGCCTCGGGAAGTCTGGAGAACGTCCCGGGATTTGATCTCCGTACCTTCTGACAAGGAGGAGCCGACCTCCAGAGCATCAAAGAAAATTAACAAGACTGGCGCCCTGCAGTATTTGCATTCCCAGGATGCAGGGGAAGACGGGAGGGAGCGCATGAGGTGTTCATCGGTGGTTGTCCAGCGAGTCGAGGCACCGGTGAGCGTTGTCTGGTCGCTGGTTCGACGCTTCGATGAGCCCCAAATTTACAAGCACTTTGTCCGCAAGTGCTCCATACGAGGTGAGGGGGATCTGAAGGTAAAGGTCGGCTGCCTCAGAGAGGTTCTAGTCGTCTCTGGTCTCCCTGCGGCCAACAGCACCGAAAGGCTCGACATTCTGGATGAGGAGCAGCATATTCTGAGCTTCAGCATCGTTGGGGGAGATCACAGGCTGAGCAATTATCGATCCATTACCAATCTGCAAGAAACGGTCATAAATGACATT

Fln Alignment:

biogeco3_mira_c3406___SRASKKINKTGALQYLHSQDA---------------GEDGRERMRCSSVVVQRVEAPVSVVWSLVRRFDEPQIYKHFVRKCSIRGEGDLKVKVGCLREVLVVSGLPAANSTERLDILDEEQHILSFSIVGGDHRLSNYRSITNLQETVIN
A9NQM9__________________SGASKQITKTGAVQYLKGEEGYGEWLKEVMGRYHYHSHDGARECRCSSVVVQQVEAPVSVVWSLVRRFDQPQVYKHFVSNCFMRGD----LKVGCLREVRVVSGLPAATSTERLDILDEERHILSFSIVGGDHRLNNYRSITTLHETLIN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
52	25	75			0.996473
68	25	50			0.995534
73	75	25			0.996474
288	50	50			1.0
289	25	75			0.996473
290	25		50	25	0.995547
291			75	25	0.996477
292		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain