SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13407

Length: 416 nt

UniGene Fasta

>biog3_v1.0_unigene13407
AATGTTGTTGGATAAGATGACTAAGGAAGGCATAACGCCGAATATTGTTACTTATAACTCTATTATTGATGCCTTCGGGAAGAGTAACCAGGTCCATTCCAGGAGCTCGCATGAGGGTTTCTCTCAAATTGATGTAGATGAGAAAACCCAAGATAAATTTTCAGAAAATTTAGCAATCCATAATACAACAAATTTGCATAAATACGAAAACACAGCAGACAATGTATTAGCACCGGTTGGGCAGCTTGGAATTGAGAGAACTCGTAGTATATATCTTGCTGACTTTGAGGAGATGAAAGGAAGATCCAAGGAGATTTTGTGTACAGTGGAAATGTTTCATAAAATGCATCAGCTTGGAGTAAAACCAAATGTAGTGACTATTTTCTGCCATTCTAAACGCTTGCAGTCGTTGTCGA

Ace file of the UniGene biog3_v1.0_unigene13407

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1864	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	genomes uncoupled 1 protein [Arabidopsis thaliana] sp\|Q9SIC9.1\|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb\|AAD26479.1\| unknown protein [Arabidopsis thaliana] gb\|AEC08542.1\| genomes un	-	-	60%
FL-Next	sp=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	pentatricopeptide repeat-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	71%
Blast2go	chloroplast-nucleus signaling pathway	GO:0010019	Biological Process	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIC9

Fln msg: Separated hits, possible frame ERROR between 379 and 381, Distance to subject end: 229 aas, your sequence is shorter than subject: 139 - 918

Fln protein: MLLDKMTKEGITPNIVTYNSIIDAFGKSNQVHSRSSHEGFSQIDVDEKTQDKFSENLAIHNTTNLHKYENTADNVLAPVGQLGIERTRSIYLADFEEMKGRSKEILCTVEMFHKMHQLGVKPNVVxxFSAILNACSRCR

Protein Length: 140

Fln nts: AATGTTGTTGGATAAGATGACTAAGGAAGGCATAACGCCGAATATTGTTACTTATAACTCTATTATTGATGCCTTCGGGAAGAGTAACCAGGTCCATTCCAGGAGCTCGCATGAGGGTTTCTCTCAAATTGATGTAGATGAGAAAACCCAAGATAAATTTTCAGAAAATTTAGCAATCCATAATACAACAAATTTGCATAAATACGAAAACACAGCAGACAATGTATTAGCACCGGTTGGGCAGCTTGGAATTGAGAGAACTCGTAGTATATATCTTGCTGACTTTGAGGAGATGAAAGGAAGATCCAAGGAGATTTTGTGTACAGTGGAAATGTTTCATAAAATGCATCAGCTTGGAGTAAAACCAAATGTAGTGACxxxATTTTCTGCCATTCTAAACGCTTGCAGTCGTTGTCGA

Fln Alignment:

biogeco3_mira_c3274___LLDKMTKEGITPNIVTYNSIIDAFGKSNQVHSRSSHEGFSQIDVDEKTQDKFSENLAIHNTTNLHKYENTADNVLAPVGQLGIERTRSIYLADFEEMKGRSKEILCTVEMFHKMHQLGVKPNVVTxFSAILNACSRC
Q9SIC9__________________LIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALT--------------ETEGNRVIQLFGQLTTE-SNNRTTKDCEE---GMQELSCILEVFRKMHQLEIKPNVVTxFSAILNACSRC

SNPs (tot: 3)

Position	A %	G %	T %	Probability
113	20	80		0.995495
117		80	20	0.995497
166	33	66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain