SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13391

Length: 295 nt

UniGene Fasta

>biog3_v1.0_unigene13391
AATGTAGAACACCGTCAGGACCATTGCCATGGATGAAACCGAGGGGCTTGTCCGTGGTCAGAAGGTTTTGAACACGGGATCGCCCATCACGATCCCTGTGGGCAGGGCCACTCTTGGTCGCATCATGAATGTGATCGGGGAGGCTATTGATGAAAAGGGCGAATTAAAGACTGAGCACTTCTTGCCAATTCATCGTGAGGCACCTTCCTTTGTTGAGCAGTCAACAGAGCAAGAAATTCTTGTGACTGGAATTAAGGTTGTGGACCTTCTTGCACCATATCAACGTGGAGGAAAG

Ace file of the UniGene biog3_v1.0_unigene13391

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16224	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	ATP synthase subunit beta, mitochondrial n=4 Tax=Nicotiana RepID=ATPBM_NICPL	-	-	84%
FL-Next	sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	atp synthase beta chain	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	89%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	89%
Blast2go	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 332 aas, your sequence is shorter than subject: 98 - 568

Fln protein: M*NTVRTIAMDETEGLVRGQKVLNTGSPITIPVGRATLGRIMNVIGEAIDEKGELKTEHFLPIHREAPSFVEQSTEQEILVTGIKVVDLLAPYQRGGK

Protein Length: 99

Fln nts: AATGTAGAACACCGTCAGGACCATTGCCATGGATGAAACCGAGGGGCTTGTCCGTGGTCAGAAGGTTTTGAACACGGGATCGCCCATCACGATCCCTGTGGGCAGGGCCACTCTTGGTCGCATCATGAATGTGATCGGGGAGGCTATTGATGAAAAGGGCGAATTAAAGACTGAGCACTTCTTGCCAATTCATCGTGAGGCACCTTCCTTTGTTGAGCAGTCAACAGAGCAAGAAATTCTTGTGACTGGAATTAAGGTTGTGGACCTTCTTGCACCATATCAACGTGGAGGAAAG

Fln Alignment:

biogeco3_mira_c3147___NTVRTIAMDETEGLVRGQKVLNTGSPITIPVGRATLGRIMNVIGEAIDEKGELKTEHFLPIHREAPSFVEQSTEQEILVTGIKVVDLLAPYQRGGK
A9NUR7__________________NTVRTIAMDETEGLVRGQKVLNTGSPITIPVGRATLGRIMNVIGEAIDHKGDLTTDHYLPIHREAPSFVEQSTEQEILVTGIKVVDLLAPYQRGGK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
147	33			66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain