SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13341

Length: 545 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13341
AATGTCTCGTTGTTCGGCCATTTCTGAGGGTTCCACAACGTTTGTTGGAAGAGTCGCAGGGCACAATGTTGCAGAACAAGTCCTTTGTGAGGAAAACAAAGCATGGCCGCGTCATGAAGGTGGTAAGAGAGCACTATCTGCGAGATGATATATACTGTGGAGTTCTTATGTGCGAAGCATGTGATCTATCGACTGCCCGCATTAGTCAGTCAGCCTCTCTTGTATTGATTCTTGACACCAATGTAGTACTCAATCAGATTGACCTCCTGGAGAACACGGTCATCAATGATGTGGTTGTTCTTTCAGTTGTACTCGAAGAAGTAAAAAATAAGAACATGTCTGTATATAACAGGGTTCGCACGCTTTGCAGTGATCCAACACGGCATTATTTTGTCTTTGCAAATGAACATCACAAGGATACTTATGTGAAAGCAATGGTTGGCGAGAGCCCTAATGATCGAAACGACAGAGCGATTCGTGTAGCTAGCGACTGGTATCAGAAGCATTTGGGGGAAGGTGTACGTGTGTTACTACTTACTAATGAC

Ace file of the UniGene biog3_v1.0_unigene13341 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2654	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana] gb\|AAL09713.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAL90959.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAD32908.2\| putative mitotic control protein dis3 [Arabidopsis thaliana] gb\|AE	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	78%
Blast2go	exosome complex exonuclease dis3 rrp44	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Exoribonuclease II.	EC:3.1.13.1	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	84%
Blast2go	exoribonuclease II activity	GO:0008859	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide binding protein, PINc	IPR006596	-	0.0	-
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SWC0

Fln msg: Distance to subject end: 777 aas, your sequence is shorter than subject: 160 - 937

Fln protein: MLQNKSFVRKTKHGRVMKVVREHYLRDDIYCGVLMCEACDLSTARISQSASLVLILDTNVVLNQIDLLENTVINDVVVLSVVLEEVKNKNMSVYNRVRTLCSDPTRHYFVFANEHHKDTYVKAMVGESPNDRNDRAIRVASDWYQKHLGEGVRVLLLTND

Protein Length: 161

Fln nts: AATGTCTCGTTGTTCGGCCATTTCTGAGGGTTCCACAACGTTTGTTGGAAGAGTCGCAGGGCACA_-_ATGTTGCAGAACAAGTCCTTTGTGAGGAAAACAAAGCATGGCCGCGTCATGAAGGTGGTAAGAGAGCACTATCTGCGAGATGATATATACTGTGGAGTTCTTATGTGCGAAGCATGTGATCTATCGACTGCCCGCATTAGTCAGTCAGCCTCTCTTGTATTGATTCTTGACACCAATGTAGTACTCAATCAGATTGACCTCCTGGAGAACACGGTCATCAATGATGTGGTTGTTCTTTCAGTTGTACTCGAAGAAGTAAAAAATAAGAACATGTCTGTATATAACAGGGTTCGCACGCTTTGCAGTGATCCAACACGGCATTATTTTGTCTTTGCAAATGAACATCACAAGGATACTTATGTGAAAGCAATGGTTGGCGAGAGCCCTAATGATCGAAACGACAGAGCGATTCGTGTAGCTAGCGACTGGTATCAGAAGCATTTGGGGGAAGGTGTACGTGTGTTACTACTTACTAATGAC

Fln Alignment:

biogeco3_mira_c2894___MLQNKSFVRKTKHGRVMKVVREHYLRDDIYCGVLMCEACDLSTARISQSASLVLILDTNVVLNQIDLLENTVINDXXXXXXXXXXVKNKNMSVYNRVRTLCSDPTRHYFVFANEHHKDTYVKAMVGESPNDRNDRAIRVASDWYQKHLGEGVRVLLLTND
D7SWC0__________________MLQSKSFVRKTKQGKVVKVVREHYLRDDIYCGASICKVCDSSTARLSPSASTILILDTNVVLNQIDLLENPAIDDVVVLSVVLEEVKNKNISVYNRLRTLCSNSMRKFFVFSNEYHKDTYVKQMAGESPNDRNDRAIRVATQWYQSHLGAAARVLLITND

SNPs (tot: 4)

Position	A %	G %	T %	Probability
223	33		66	0.997476
224	33		66	0.997476
226		33	66	0.997476
227	66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain