SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13332

Length: 561 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13332
AATGTTATTTCAGCCTGCCTTCAAAAGGACCCTAAGGAGAGAATGTCACCTGTGGATCTTTTGAATCATCCATTTATAAAAAAGTTTGAGGACAAAGACATTGATCTAGCAATTTTGATTCGCACTCTAGACCCTCCTATGTAGTTCCTTTGCGCATCTAAAAGATGCAAGTGATGAGATAGAATTGTTCTTCTAGATTCTGGGATTTCTTTCAAGGTGCAAAGAGCAAAAGTAACATTCAGCTTCTTGTCACACAAGTTTGTAAAGTATGACGTTTGGGTGAACTGAGGAACCTGCCATCAGAAAAGTCCATACAGTCCGAAGAGAGATGTGATATTATTTCGGTTATTTGGGACCTACTGTGTACTGTACTATTTACGCCATATTTCCAACAACGTTATTGGCATGTAGGGGTAAAATTTAGGCCAAGCTTTTTTGCTTTCTTGGAGATATCATGCCAGAATTTTTTGATATAGTTTAGACTGGATTCCAGCAGTGTACCTATGCCTTTTGCGATGTATAGGTATGTGATTACAATAAACACACAAATGATATTACATT

Ace file of the UniGene biog3_v1.0_unigene13332 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17085	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	mitogen-activated protein kinase kinase 6	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	0.0	87%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9P4

Fln msg: your sequence is shorter than subject: 48 - 349

Fln protein: NVISACLQKDPKERMSPVDLLNHPFIKKFEDKDIDLAILIRTLDPPM*

Protein Length: 49

Fln nts: AATGTTATTTCAGCCTGCCTTCAAAAGGACCCTAAGGAGAGAATGTCACCTGTGGATCTTTTGAATCATCCATTTATAAAAAAGTTTGAGGACAAAGACATTGATCTAGCAATTTTGATTCGCACTCTAGACCCTCCTATGTAG___TTCCTTTGCGCATCTAAAAGATGCAAGTGATGAGATAGAATTGTTCTTCTAGATTCTGGGATTTCTTTCAAGGTGCAAAGAGCAAAAGTAACATTCAGCTTCTTGTCACACAAGTTTGTAAAGTATGACGTTTGGGTGAACTGAGGAACCTGCCATCAGAAAAGTCCATACAGTCCGAAGAGAGATGTGATATTATTTCGGTTATTTGGGACCTACTGTGTACTGTACTATTTACGCCATATTTCCAACAACGTTATTGGCATGTAGGGGTAAAATTTAGGCCAAGCTTTTTTGCTTTCTTGGAGATATCATGCCAGAATTTTTTGATATAGTTTAGACTGGATTCCAGCAGTGTACCTATGCCTTTTGCGATGTATAGGTATGTGATTACAATAAACACACAAATGATATTACATT

Fln Alignment:

biogeco3_mira_c2831___ISACLQKDPKERMSPVDLLNHPFIKKFEDKDIDLAILIRTLDPPM
D5A9P4__________________ISACVQKDPKDRMSATDLLNHPFIKRYEDQNVDLAALLSSLSSPV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
471	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain