SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13273

Length: 476 nt

UniGene Fasta

>biog3_v1.0_unigene13273
AATGTCTATGGACGCAGTGGTAGTGGGAAGACAACTTTGTTGCAGGTTCTTGGTGGCTTAGCAAAGCCAACAGAGGGATCAATCTATATTCAAAAGATTGGTCTAGATGGAGAACTAATTCAATCACGAGAAACATTATTGGCTACAAAGGTTGGGATTGTATTCCAATTTCCAGAGAGGTTCTTTTTGGCTGATACTGTGTTGGAGGAGCTCACTTTTGGATGGCCAAGGCAATTGGAAGACCAACTCTTAAGGCAAAAACTAGCAATGAGGCTTGAGTCAGCTATTCGAGCTGTTGGACTGAGTGGGATCTCCTTAGATCTTAATCCACGCTCTTTAAGTGACGGTTTCAAGCGTCGTCTTGCACTGGCAGTTCAGCTTGTACGCATGCCAGACATCTTGTTGTTAGATGAGCCTCTTGCAGGTCTTGACTGGAAAGCTCGGACAGATGTGGTAAAGTTACTGGAGAATCTGAA

Ace file of the UniGene biog3_v1.0_unigene13273

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10209	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter I family member 11 [Arabidopsis thaliana] sp\|Q8LEF6.1\|AB11I_ARATH RecName: Full=ABC transporter I family member 11, chloroplastic; Short=ABC transporter ABCI.11; Short=AtABCI11; AltName: Full=Non-intrinsic ABC protein 14; Flags: Precursor	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	abc transporter i family member	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.3.3-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEF2

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 158 - 239

Fln protein: NVYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKIGLDGELIQSRETLLATKVGIVFQFPERFFLADTVLEELTFGWPRQLEDQLLRQKLAMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLENL

Protein Length: 159

Fln nts: AATGTCTATGGACGCAGTGGTAGTGGGAAGACAACTTTGTTGCAGGTTCTTGGTGGCTTAGCAAAGCCAACAGAGGGATCAATCTATATTCAAAAGATTGGTCTAGATGGAGAACTAATTCAATCACGAGAAACATTATTGGCTACAAAGGTTGGGATTGTATTCCAATTTCCAGAGAGGTTCTTTTTGGCTGATACTGTGTTGGAGGAGCTCACTTTTGGATGGCCAAGGCAATTGGAAGACCAACTCTTAAGGCAAAAACTAGCAATGAGGCTTGAGTCAGCTATTCGAGCTGTTGGACTGAGTGGGATCTCCTTAGATCTTAATCCACGCTCTTTAAGTGACGGTTTCAAGCGTCGTCTTGCACTGGCAGTTCAGCTTGTACGCATGCCAGACATCTTGTTGTTAGATGAGCCTCTTGCAGGTCTTGACTGGAAAGCTCGGACAGATGTGGTAAAGTTACTGGAGAATCTGAA

Fln Alignment:

biogeco3_mira_c2490___VYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKIGLDGELIQSRETLLATKVGIVFQFPERFFLADTVLEELTFGWPRQLEDQLLRQKLAMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLENL
D5AEF2__________________VYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKTGLDGQLNQSPETLSASKVGIVFQFPERFFLADTVLEELTFGWPRQLEDQLLRQRLVMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLETL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
430	33			66	0.997453
433			33	66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain