SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13261

Length: 1478 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene13261

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7196	116/119
SustainPine v2.0	sp_v2.0_unigene32999	2/119

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	stearoyl-acyl-carrier protein desaturase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-[acyl-carrier-protein] desaturase.	EC:1.14.19.2	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	87%
Blast2go	acyl-[acyl-carrier-protein] desaturase activity	GO:0045300	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Fatty acid desaturase, type 2	IPR005067	-	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	-
Sma3	Stearoyl-ACP desaturase, conserved site	IPR005803	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR90

Fln msg:

Fln protein: MTKEDKELEQQGFTSKDYTDPPPAALIDSSEFKLWSFYRALIAEFIATLLFLYITIATVIGHSRNSANCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMIAQCLGAICGTGLVKAFQKSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDQWIFWVGPFCGAALAAAYHQYILRAAAIKALGSFRSNPHV*

Protein Length: 283

Fln nts: CGGGATGCTCATCAAGCCCATTCATCCATTCGTTGCCTTGCAACAACATCTGAGTTCTCTGTTCTCCTCTCCCACGCAATTCTGAGCCTCTGTTCCACAAACCCAGAAGAAGTCGAGTTTATAAGTAGTAGCAAAAGTTCAGTACCGGCAGCC_-_ATGACAAAGGAAGACAAGGAATTGGAGCAGCAGGGGTTTACCTCCAAGGACTACACAGACCCACCTCCTGCCGCTCTTATTGATTCTAGTGAATTCAAGCTCTGGTCATTTTACAGGGCTCTGATAGCAGAATTCATTGCTACATTGTTGTTTCTCTATATTACCATTGCTACTGTGATTGGGCATTCCAGGAACTCAGCAAACTGTGGGAGTGTTGGGGTGTTGGGTATTGCCTGGTCATTTGGGGGCATGATTTTCGTTTTGGTTTACTGCACCGCTGGTATTTCAGGAGGGCATATCAATCCTGCTGTCACTTTTGGACTGTTTTTAGCTAGGAAGGTTTCCTTGCCAAGAGCTGTTCTGTATATGATAGCACAGTGTTTGGGGGCCATTTGTGGAACTGGATTGGTGAAGGCCTTCCAAAAGAGTTTCTATGATAGATATGGGGGTGGAGCTAACTTTGTGCATCCCGGATACACCAAGGGTGTGGGTTTGGCTGCTGAAATCATCGGCACCTTTGTGCTAGTTTACACTGTTTTCTCTGCAACCGACCCCAAGCGCAGTGCTCGAGACTCCCATGTTCCTGTCTTGGCTCCATTGCCTATTGGTTTTGCTGTTTTCATGGTACATTTGGCCACCATTCCCATCACTGGGACAGGCATCAACCCTGCAAGGAGCTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCTTGGGATGACCAATGGATTTTCTGGGTAGGTCCTTTTTGTGGAGCTGCATTAGCTGCTGCCTACCACCAATATATTCTGAGGGCAGCAGCTATCAAGGCCTTGGGATCGTTCCGAAGCAACCCCCATGTGTAA___TTAGGAGACAGTTGCTGCAGGTAGGAGTTGTCAGTGTCTCAAGTCTGTAGGTATGCAATAAAAGAATAATAGCTATGGACAATTTATGTCTAGCACTGGATGACACCAAGTAGCAACAGTGAGGAGAATTGTTTGTGGAAGATAGCTTCTTCGCTCAGACCCTTGATTTGGGGGAAGTATTACTGAGTACAAAGGGCAGAGAGGGTGATGGTTTGTTCGTTTGGATTGAATCCAGTGTTGCTGCAGCAGCAGTAAGAATGGTTGTAATTTATGTAGACATTATGCATGATTGTACTCAGAAGTAGTACCTCCTCTCCATGTAATTGTTCATAATTTCTTCTTCCTCTGCTCTGTTTGGTAATCAGAGGACTTAGTACACTGGTTTGTAAGTATAGTGTTTGTGTGTCCTCTTCTTCTGTAAACATGATTTTGTGGGCAGTTGCATATAACATCCATTTGGAATTAAAAGTTTTCACATT

Fln Alignment:

biogeco3_mira_c2425___MTKED-KELEQQGFTSKDYTDPPPAALIDSSEFKLWSFYRALIAEFIATLLFLYITIATVIGHSRNSANCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMIAQCLGAICGTGLVKAFQKSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDQWIFWVGPFCGAALAAAYHQYILRAAAIKALGSFRSNPHV
C0PR90__________________MTKEEGKEMEQQGFAPKDYTDPPPASLIDSGEFRLWSFYRALIAEFIATLLFLYITIATVIGHSRTSTNCGSVGVLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGAICGTGLVKAFQKSFYDQNGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKQSWDDHWIFWVGPFIGAALAAAYHQYILRAAAIKALGSFRSNPHV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1253	33		66		0.997471
1254	33	66			0.997471
1257		75		25	0.996486
1282			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain