SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13155

Length: 1654 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene13155 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9084	2/72
SustainPine v2.0	sp_v2.0_unigene18617	70/72

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	88%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	-
Sma3	Tumour necrosis factor	IPR006052	-	-
Sma3	NOP5, N-terminal	IPR012974	-	-
Sma3	NOSIC	IPR012976	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV25

Fln msg: STOP codon was not found. Distance to subject end: 125 aas, your sequence is longer than subject: 191 - 67

Fln protein: MLEALQILQNVQHQLFRFLVLRKLSSGHLKHVETPQKYGLIFHSSFIGRASTRNKGRISRYLANKCSIASRIDCFSEVNTNIFGEKLREQVEERLEFYDKGIAPRKNLDVMKEAIQNSGKENGDMPKLDSEKKKKKKKTEQMEVDLLKQAPEAEEFAGSEKKRKKEKKRLRQDIDASEENGVTEEALVAST

Protein Length: 192

Fln nts: AGCAGAACCCTGGAGAACTGGGGAAGGCCAAAATTGATATCGAGAGTAGCACAGAGCATGGGAAGGAAAGGCTGCTGCATATTGTCATAATCTTATTCAACTTCTAGTTTATTATCACGCCCTAGAAAGCTCGCTCTGAAATGGCTCTATATTTGCTGTTTGAATTTGCATCTGGGTATGGATTATTTGAGGCCCATGGATTAGATGAAATTGGGCAGAGCATCGAAGCTGTTCAGAACTCTGTCATTGATATTAATCGTTTTGGGAAGGTTGTGAAGTTTGTTGCAATTCAACCATTTAGTTCTGCTTTAGATGCTCTACAGCAGTGCAATGCTGTATCTGAAGGACTGTTGACAGATGAGTTGAGAAATTTTTGGAGCTAAACTTGCCAAAAGTCAAGGAGGGGAAAAAGCCAAAATTCAGCTTGGGAATATCAGAGCCAAAGCTAGGCTCTCAAATTTTTGAAGTTCTGAGAATTCCTTGCCAGAGCAATGATTTTGTTTTGGAGCTTCTTCGTGGAGTCCGCCTTCATATTCACACATTCATTAAGAATCTCAAGGAAGCAGACTTGGAGAAGGCCCAGTTAGGTCTTGGGCATAGTTATAGCAGAGCCAAAGTAAAGTTTAATGTCAATAGAGTGGATAACATGATTATACAGGCTATTAGTCTTCTTGATACTTTGGACAAAGACATAAATACCTTCTGCATGAGAGTAAGGGAGTGGTACTCATGGCATTTTCCCGAGCTGGTGAAGATTATCAATGACAACTATATCTATGCAAGAGTAGCAAAATATGTGAAGGACAAGTCCACTTTGTCAGAGGATGCCATATCTGAGTTGACAGATATAACTGGTGATGAAGACAAAGCTAAGGATATTATTGAGGCAGCTAAGGCTTCCATGGGTCAAGACATCTCTCCAATTGACTTAATAAACATTGAGCAGTTTGCACAAAGGGTTATAGAACTTTCAGAATATCGAAAGCAGCTTCATTCTTATCTTGTGTCAAAGATGCAAGATATTGCTCCAAATCTTGCAAGTTTGATTGGTGAAATGGTGGGTGCTCGGTTGATATCTC_-_ATGCTGGAAGCCTTACAAATCTTGCAAAATGTCCAGCATCAACTCTTCAGATTCTTGGTGCTGAGAAAGCTCTCTTCAGGGCACTTAAAACACGTGGAAACACCCCAAAAATATGGTCTTATTTTTCATTCTTCTTTTATTGGGAGGGCCTCTACTCGAAATAAAGGTCGTATATCACGTTACCTGGCAAATAAATGTTCCATAGCTTCTCGAATTGATTGTTTCTCTGAGGTGAATACAAATATATTTGGTGAGAAACTTCGAGAGCAGGTTGAGGAAAGGTTAGAATTCTATGACAAGGGCATCGCCCCTCGTAAGAACCTTGATGTTATGAAAGAGGCTATTCAAAATTCTGGGAAGGAAAATGGTGACATGCCTAAACTTGACAGTGAAAAGAAGAAGAAGAAGAAGAAAACAGAGCAAATGGAAGTTGATCTGTTGAAGCAAGCACCCGAAGCAGAGGAATTTGCTGGATCGGAGAAGAAAAGAAAGAAAGAAAAGAAACGTCTTAGACAGGACATTGATGCTAGTGAAGAAAATGGTGTTACTGAGGAAGCGCTGGTAGCTTCTACATT

Fln Alignment:

biogeco3_mira_c1415___MLEALQILQNVQHQLFRFLVLRKLSSGHLKHVETPQKYGLIFHSSFIGRASTRNKG
A9NV25__________________MLGALQTLQNVQRQPFRFWVLRRLFSGLLKHVETHQSMVLFFIHLLLGELLLEIRG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1536	20		80		0.995493
1537		80		20	0.995493
1540			80	20	0.995493
1581	14			85	0.993533
1585	85			14	0.993533
1659		80		20	0.995498

SSRs (tot: 2)

Start position	End position	Sequence	Length
77	91	TTTC TTTC TTTC TTT	15
163	182	TTC TTC TTC TTC TTC TTC TT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain