SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13140

Length: 634 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene13140 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7784	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium transporter MRS2-I n=6 Tax=Poaceae RepID=MRS2I_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	magnesium transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	86%
Blast2go	magnesium ion transport	GO:0015693	Biological Process	86%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
165	20			80	0.995493
166	20			80	0.995493
168	80		20		0.995493
169			80	20	0.995493
244			40	60	1.0
321	20			80	0.995493
322		20	80		0.995493
324			80	20	0.995493
325	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain