SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13097

Length: 746 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene13097 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80	8/12
SustainPine v2.0	sp_v2.0_unigene33264	2/12
SustainPine v2.0	sp_v2.0_unigene34831	2/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0114 domain containing protein	-	-	2.0e-39	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	uncharacterized protein	-	-	0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0114	IPR005134	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
296	25	75			0.996473
300		75		25	0.996473
362			66	33	0.997464
499	25			75	0.996473
500	25	75			0.996473
501			75	25	0.996473
502	75		25		0.996473
503		75		25	0.996473
504	20	80			0.995493
505	20			80	0.995493
507		80	20		0.995493
552	75		25		0.996479
556	25		75		0.996477
557	75	25			0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain