SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12365

Length: 506 nt

UniGene Fasta

>biog3_v1.0_unigene12365
AATGTCTTACTGGAAAGACAATCACTTTAGAGGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGAGGCATGCAGATCTTTGTGAAAACTCTTACGGGAAAAACCATTACATTGGAGGTGGAGAGCTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAGCAAAGGCTGATTTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGGCTGATTATAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAATTTAAAGGTCTTTTTGGAATAGCTTCGCAGGGTTTCCGTAAAAGATGTTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene12365

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8185	6/20
SustainPine v2.0	sp_v2.0_unigene16151	3/20
SustainPine v2.0	sp_v2.0_unigene16871	3/20
SustainPine v2.0	sp_v2.0_unigene61202	1/20
SustainPine v2.0	sp_v2.0_unigene61302	3/20

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin 4 [Arabidopsis thaliana] ref\|XP_002881273.1\| hypothetical protein ARALYDRAFT_482268 [Arabidopsis lyrata subsp. lyrata] sp\|P0CH32.1\|UBQ4_ARATH RecName: Full=Polyubiquitin 4; Contains: RecName: Full=Ubiquitin; Flags: Precursor emb\|CAA31331.1\|	-	-	99%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	GO:0042787	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	99%
Blast2go	nucleus	GO:0005634	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: W2: There is no M at the beginning, your sequence is shorter than subject: 149 - 229

Fln protein: CLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF*

Protein Length: 150

Fln nts: A_-_ATGTCTTACTGGAAAGACAATCACTTTAGAGGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGAGGCATGCAGATCTTTGTGAAAACTCTTACGGGAAAAACCATTACATTGGAGGTGGAGAGCTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAGCAAAGGCTGATTTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGGCTGATTATAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAATTTAAAGGTCTTTTTGGAATAGCTTCGCAGGGTTTCCGTAAAAGATGTTTCTACATT

Fln Alignment:

Contig12365___LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4__________________LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
212	20			80	0.995493
258	66			33	1.0
273		50		50	1.0
312		37		62	1.0
325	12	87			0.992554
326		87		12	0.992554
330	57		42		1.0
357			42	57	1.0
374	10		90		0.90298
375	40			60	1.0
376		90		10	0.90298
381		60		40	1.0
399		60		40	1.0
402			83	16	0.994512
403	83			16	0.994512
411	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain