SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12355

Length: 725 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12355 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14463	2/20
SustainPine v2.0	sp_v2.0_unigene21611	15/20
SustainPine v2.0	sp_v2.0_unigene70488	2/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative early light induced protein 2 n=1 Tax=Camellia sinensis RepID=C9E439_CAMSI	-	-	8.0e-40	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	early light-inducible protein	-	-	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-
Sma3	Uncharacterised protein family UPF0041	IPR005336	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
496		83	16		0.994512
624		11		88	0.923564
660	12	87			0.992554
661		12		87	0.992554
664			87	12	0.992554
676	83			16	0.994512
687		20		80	0.995493
690			40	20	1.0
691		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain