SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12344

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12344
ATATGAAAATGATTTCAATTTTCGACAAATTTGAGTGTTGTTTAAGTGGAGATGGACTTCGTGTGGCAACTGGTTCATACAGCAACCTGTTTCGAGTTTTTGGTAGTGTTCCCTCTAGTGAAGAGGCAACCACATTAGAAGCTAGCAAAACTCCCAATAGAAGACGGAACATACAGGCCTCTTCTAAGACTTCAAGATCTCTTACGAGTCTTGCTCGCGTCCGCAATAGACGAGGAAATGAGAGCCCAGGAAGTGAGATGAATGGAGGTGGTTATGATTTTAGTACAAAGTTGCTTCACTTGGCATGGCATCCAACAGCAAATGTCATTGCCTGTGCCGCTTCGAATAGCTTGTACATGTATTATGCCTTAAAT

Ace file of the UniGene biog3_v1.0_unigene12344 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11168	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=3 Tax=rosids RepID=Q9FVD4_MEDSV	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	85%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	85%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	85%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	85%
Blast2go	protein phosphatase type 2A complex	GO:0000159	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3		IPR019578	-	-
Sma3	Protein phosphatase 2A, regulatory subunit PR55	IPR000009	-	-
Sma3	Protein phosphatase 2A, regulatory subunit PR55, conserved site	IPR018067	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACE2

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 124 - 152

Fln protein: MKMISIFDKFECCLSGDGLRVATGSYSNLFRVFGSVPSSEEATTLEASKTPNRRRNIQASSKTSRSLTSLARVRNRRGNESPGSEMNGGGYDFSTKLLHLAWHPTANVIACAASNSLYMYYALN

Protein Length: 125

Fln nts: ATATGAAAATGATTTCAATTTTCGACAAATTTGAGTGTTGTTTAAGTGGAGATGGACTTCGTGTGGCAACTGGTTCATACAGCAACCTGTTTCGAGTTTTTGGTAGTGTTCCCTCTAGTGAAGAGGCAACCACATTAGAAGCTAGCAAAACTCCCAATAGAAGACGGAACATACAGGCCTCTTCTAAGACTTCAAGATCTCTTACGAGTCTTGCTCGCGTCCGCAATAGACGAGGAAATGAGAGCCCAGGAAGTGAGATGAATGGAGGTGGTTATGATTTTAGTACAAAGTTGCTTCACTTGGCATGGCATCCAACAGCAAATGTCATTGCCTGTGCCGCTTCGAATAGCTTGTACATGTATTATGCCTTAAAT

Fln Alignment:

Contig12344___SIFDKFECCLSGDGLRVATGSYSNLFRVFGSVPSSEEATTLEASKTPNRRRNIQASSKTSRSLTSLARVRNRRGNESPGSEMNGGGYDFSTKLLHLAWHPTANVIACAASNSLYMYYA
D5ACE2__________________SIFDKFECSLSGDGLHVATGSYSNMFQVFGCFAGNDEGTILEASKSPNRRI-LPTPSRPGRSLASLTRSRTRRGNESPSGEINGGASDFNSKLLHLAWHPAANVIACAASNSLYMYYA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
9		75		25	0.996473
59	14		85		0.993533
60	14			85	0.993533
63			85	14	0.993533
106	57		42		1.0
115	12	87			0.992554
118		87	12		0.992554
321	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain