SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12343

Length: 336 nt

UniGene Fasta

>biog3_v1.0_unigene12343
ACTATGGTTGAATGCATTCAATGAAGAGCTTTCTTCTGCATCAACAGTCTCAGAGCAGAGGAGGGCTGTTCAAAGATTGCTGGCCATCAGTAGTTTGATCAATCAAGCTGTTGGGGATGCGTTGAGTGGCTTGTTGTTGGTAGAGGTAATTCTTCACTATATGGGATGGTCCATTCAAACATGGAATACACTATATCAGGACCTTCCGAGCAGACAATTGAAGGTCAAAGTTGCAGACAGAACATCTATAGTCACTACTGATGCAGAAACTAGGGTTGTAAGGCCCTTGGGACTTCAGGAAGCAATTGATTCAGAAGTTGTAAAATATTCTACATT

Ace file of the UniGene biog3_v1.0_unigene12343

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28239	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucosamine mutase [Carica papaya]	-	-	57%
FL-Next	sp=Phosphoacetylglucosamine mutase; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	phosphoacetylglucosamine mutase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	photoreactive repair	GO:0000719	Biological Process	73%
Blast2go	response to UV	GO:0009411	Biological Process	73%
Blast2go	cytosol	GO:0005829	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Phosphoacetylglucosamine mutase	IPR016657	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P57750

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 111 - 556

Fln protein: LWLNAFNEELSSASTVSEQRRAVQRLLAISSLINQAVGDALSGLLLVEVILHYMGWSIQTWNTLYQDLPSRQLKVKVADRTSIVTTDAETRVVRPLGLQEAIDSEVVKYST

Protein Length: 112

Fln nts: ACTATGGTTGAATGCATTCAATGAAGAGCTTTCTTCTGCATCAACAGTCTCAGAGCAGAGGAGGGCTGTTCAAAGATTGCTGGCCATCAGTAGTTTGATCAATCAAGCTGTTGGGGATGCGTTGAGTGGCTTGTTGTTGGTAGAGGTAATTCTTCACTATATGGGATGGTCCATTCAAACATGGAATACACTATATCAGGACCTTCCGAGCAGACAATTGAAGGTCAAAGTTGCAGACAGAACATCTATAGTCACTACTGATGCAGAAACTAGGGTTGTAAGGCCCTTGGGACTTCAGGAAGCAATTGATTCAGAAGTTGTAAAATATTCTACATT

Fln Alignment:

Contig12343___WLNAFNEELSSASTV-SEQRRAVQRLLAISSLINQAVGDALSGLLLVEVILHYMGWSIQTWNTLYQDLPSRQLKVKVADRTSIVTTDAETRVVRPLGLQEAIDSEVVKYS
P57750__________________WLVSKQKDLTAKGQGGSEEHKAVSRLMAVSNLINQAVGDALSGVLLVEVILQHLGWSIEKWNELYKDLPSRQIKVEVPDRTAVVTTSEETEALRPMGIQDAINSEIKKYS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
37	16			83	0.994512
38	16		83		0.994512
39		83		16	0.994512
40	83		16		0.994512
216	90			10	0.90298
218	10			90	0.90298
219	10			90	0.90298
220		10	90		0.90298
222	90			10	0.90298
223			90	10	0.90298
240		11	88		0.923564
242	88			11	0.923564
243		88		11	0.923564
276	40			60	1.0
277		40		60	1.0
278	40		60		1.0
280	60			40	1.0
317	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain