SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12313

Length: 1021 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12313 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23188	124/125

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein (Fragment) n=1 Tax=Vitis vinifera RepID=D7TND2_VITVI	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ubiquitin-conjugating enzyme	-	-	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
98	14			85	0.993533
99			85	14	0.993533
101			85	14	0.993533
287	10	90			0.90298
288		10	90		0.90298
310		11		88	0.923564
313	88			11	0.923564
324	11			88	0.923564
325	11			88	0.923564
327		88	11		0.923564
328	12			87	0.992554
336	87			12	0.992554
344	87			12	0.992554
345	87		12		0.992554
346	11	77		11	0.968132
347	11	88			0.923564
349			11	88	0.923564
373	10	90			0.90298
375			10	90	0.90298
376	90			10	0.90298
381	10		90		0.90298
383	10	90			0.90298
384			90	10	0.90298
688		90		10	0.90298
846	12	87			0.992554
855	12		87		0.992554
857	12	87			0.992554
859	87			12	0.992554
937	80		20		0.995493
941	83			16	0.994512
1016	40	40		20	1.0
1017	40	60			1.0
1018	33	33		33	0.997753
1019	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain