SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12302

Length: 1888 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12302

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16460	220/222
SustainPine v2.0	sp_v2.0_unigene62117	2/222

Source	Descriptions	Term	Type	Identity
AutoFact	Type 2 1-hydroxy-2-methyl-2-(E)-butenyl-4-phosphate reductase n=3 Tax=Pinaceae RepID=A9P332_PINTA	-	-	95%
FL-Next	tr=Putative 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase type 2; Pinus densiflora (Japanese red pine).	-	-	98%
Blast2go	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	LytB protein	IPR003451	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B9U4V0

Fln msg:

Fln protein: MAQACAVLSSVSSCRNDSLQSAQVMMLQVRHSPLLHHQNHINLRRQKEKKKITAGIGVVRCHGGAATTAVEASESEEFDSKSFRKNLTRSKNYNRKGFGYKDEMLALMDQEYTSDLVKTLKENNNEFTWGNVTVKLAKSYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNERLEEMDVHSIPIGNEGKRFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCPWVSKVWNTVEKHKQGEYTSIIHGKYSHEETIATASFAGTYIIVKNITEARYVCDYILNGELDGSSGTKEEFLKKFKNAVSKGFDPDVDLVKLGIANQTTMLKGETEEIGKLAEKTMMRRFGVENINKHFISFNTICDATQERQDAMDDLVKEKLDFILVVGGWNSSNTSHLQEIAELNDIPSYWIDDDQRIGPGNKITFKLNHGELVEKDHWLPEGPITIGITSGASTPDKVVEDALKKIFEIKREEALQAA*

Protein Length: 489

Fln nts: TGTATTCTTCCCGGCAGCTTAAATATGATGTCAATCTTTTTCACTGAAGTACAATACTCTATTCTGATCTCGATTCATTCGATTCTGTTGTAGCACA_-_ATGGCTCAAGCGTGCGCCGTGTTGAGTTCTGTTTCCTCGTGCAGAAATGACTCGTTGCAGAGTGCCCAAGTGATGATGTTGCAGGTGAGGCATTCGCCTCTTTTGCATCATCAAAATCATATAAATCTCAGGAGGCAGAAGGAGAAGAAGAAGATTACAGCTGGAATTGGTGTCGTTCGATGCCACGGAGGAGCAGCTACTACTGCTGTGGAGGCGTCCGAGTCAGAGGAATTCGACTCAAAATCCTTCAGAAAAAACTTAACGAGAAGCAAAAATTATAACAGAAAAGGATTTGGGTACAAGGACGAGATGCTGGCCTTGATGGATCAAGAGTACACGAGTGATCTGGTGAAGACTCTAAAAGAAAATAACAATGAGTTTACTTGGGGGAATGTGACGGTCAAATTGGCCAAATCCTATGGTTTCTGCTGGGGCGTAGAACGTGCAGTGCAAATTGCATATGAAGCCAGGAAGCAATTCCCCTCTGAAAGGATCTGGATCACTAATGAAATTATACACAATCCCACAGTGAATGAGAGATTGGAGGAAATGGATGTCCATTCTATTCCTATAGGAAATGAAGGAAAACGATTTGATGTTGTTAACAAGGGAGACGTGGTGATTTTGCCCGCATTTGGAGCATCTGTACATGAAATGCAGTTGTTAAGTGAGAAAAATGTACAGATTGTAGACACAACCTGTCCGTGGGTGTCTAAGGTTTGGAACACTGTTGAGAAACACAAACAAGGAGAGTACACCTCCATCATTCATGGAAAATATTCTCACGAAGAAACCATTGCAACTGCTTCTTTTGCAGGAACTTATATTATTGTAAAGAACATTACAGAGGCCAGATATGTTTGCGATTACATCCTCAATGGTGAGCTTGATGGATCTAGTGGAACTAAAGAGGAATTCCTTAAGAAATTTAAGAATGCAGTTTCCAAGGGTTTCGACCCAGATGTTGACTTGGTCAAGTTGGGCATTGCAAACCAAACAACAATGCTAAAGGGGGAAACAGAGGAGATAGGAAAACTAGCGGAAAAGACAATGATGCGTAGATTTGGTGTTGAAAACATAAACAAACATTTCATAAGCTTCAACACTATTTGTGACGCCACTCAGGAAAGACAAGATGCAATGGACGATCTAGTAAAGGAGAAGCTTGATTTCATATTGGTAGTTGGTGGCTGGAATTCCAGCAATACTTCACACCTTCAAGAAATAGCTGAGTTGAATGACATACCTTCTTATTGGATTGACGATGACCAGCGTATTGGTCCTGGAAATAAGATTACCTTTAAATTGAATCATGGGGAGTTGGTGGAGAAAGATCACTGGTTGCCAGAGGGCCCCATTACAATTGGGATCACATCGGGTGCTTCAACACCAGACAAGGTTGTTGAAGATGCCCTGAAAAAGATCTTTGAGATCAAACGAGAAGAGGCTCTACAAGCAGCATAG___GTTCAGCTACCTATAGAGAGAAGTTTAAAACAGCAGGATTGCCTACATATCTTAGAGAAAAATTATGACCAGTTGGGAGCTTTGCCGCTCTTACTTTCTTTAAGCAAATGTATAATTTTTGTAAATAGACATAAGTTATCTAATTTGGAAGTTTTTATTGTTACTCATATTTATAATTTTCTCATAGTTTTAATTAGCAAACAGAGATTGTTCAAGAATTTCTCCAGTGGAAGATAAAACATATATCAATTAGTCATGTATTATTGTCAGTTCTAAGATGGTGTTATCTATAAAAGAAGGGTTTCTCGAAAGTATTATGAAAACATT

Fln Alignment:

Contig12302___MAQACAVLSSVSSCRNDSLQSAQVMMLQVRHSPLLHHQNHINLRRQKEKKKITAGIGVVRCHGGXXXXXXXXXXXXXFDSKSFRKNLTRSKNYNRKGFGYKDEMLALMDQEYTSDLVKTLKENNNEFTWGNVTVKLAKSYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNERLEEMDVHSIPIGNEGKRFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCPWVSKVWNTVEKHKQGEYTSIIHGKYSHEETIATASFAGTYIIVKNITEARYVCDYILNGELDGSSGTKEEFLKKFKNAVSKGFDPDVDLVKLGIANQTTMLKGETEEIGKLAEKTMMRRFGVENINKHFISFNTICDATQERQDAMDDLVKEKLDFILVVGGWNSSNTSHLQEIAELNDIPSYWIDDDQRIGPGNKITFKLNHGELVEKDHWLPEGPITIGITSGASTPDKVVEDALKKIFEIKREEALQAA
B9U4V0__________________MAQACAVLSSVSSCRNDALQSAQVMMLQVRHSPLVHNQNHINLRSQKEKKKITAGIGVVRCHGGAATTAVEASESEEFDSKSFRKNLTRSKNYNRKGFGYKDEMLALMDQEYTSDLVKTLKENNNEFTWGNVTVKLAKSYGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNERLEEMDVHSIPIGNEGKRFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCPWVSKVWNTVEKHKQGEYTSIIHGKYSHEETIATASFAGTYIIVKNITEARYVCDYILNGELDGSSGTKEEFLKKFKNAVSKGFDPDVDLVKLGIANQTTMLKGETEEIGKLAEKTMMRRFGVENINKHFISFNTICDATQERQDAMDDLVKEKLDFILVVGGWNSSNTSHLQEIAELNDIPSYWIDDEQRIGPGNKITFKLNHGELVEKDHWLPEGPITIGITSGASTPDKVVEDALKKIFEIKREEVLQAA

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
48	66		33		0.997452
78	25			75	0.996473
80		75	25		0.996473
81			75	25	0.996473
125	12			87	0.992554
126	12	87			0.992554
171		50		50	1.0
190	11			88	0.923564
195		88		11	0.923564
429	83			16	0.994512
691	11			88	0.923564
692		11	88		0.923564
707	12		87		0.992554
708		12	87		0.992554
710			87	12	0.992554
711	87			12	0.992554
717	14			85	0.993533
718		14	85		0.993533
724	20		80		0.995493
726	20	80			0.995493
727		80		20	0.995493
728	20		60	20	0.99255
759		33		66	0.997452
760	33		66		0.997452
879	25	75			0.996473
880	25			75	0.996473
881		75		25	0.996473
882	75		25		0.996473
883		75		25	0.996473
933	95			4	0.997218
935	95			4	0.997218
964	3			96	0.993037
966	96		3		0.993591
1034	5		91		0.993509
1037			91	8	1.0
1090		86	3	10	1.0
1091		86		13	1.0
1102	8		91		0.999766
1161			10	89	0.999919
1280		9	90		0.999842
1553	46		53		1.0
1620	90	10			0.90298
1622	90			10	0.90298
1635	10			90	0.90298
1637	20		80		0.999996
1639	90			10	0.90298
1640			88	11	0.923564
1641		88		11	0.923564
1674		11		88	0.923564
1676	88			11	0.923564
1696		12	87		0.992554
1698	12			87	0.992554
1699		12		87	0.992554
1702		85		14	0.993533
1710	16		83		0.994512
1711	83	16			0.994512
1713			83	16	0.994512
1720	16			83	0.994512
1730			16	83	0.994512
1740	16			83	0.994512
1741		16		83	0.994512
1742	16			83	0.994512
1743		83		16	0.994512
1824	25			75	0.996473
1863	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
240	251	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain