SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12300

Length: 743 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12300 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17859	2/97
SustainPine v2.0	sp_v2.0_unigene24832	86/97
SustainPine v2.0	sp_v2.0_unigene79388	6/97

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Picea sitchensis RepID=B8LRP3_PICSI	-	-	83%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	non-specific lipid-transfer protein	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
78	33	66			1.0
81		66	33		1.0
82	83			16	0.994512
184		16		83	0.994512
334			83	16	0.994512
355	50			50	1.0
357	20	80			0.995493
359			40	60	1.0
360			60	40	1.0
361		66		33	0.997452
712	20	20			1.0
713	14	85			0.999981
715		77		22	0.999999
716			87	12	0.992554
732	66			33	0.997452
737			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain