SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12285

Length: 1022 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12285 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5432	12/26
SustainPine v2.0	sp_v2.0_unigene8127	7/26
SustainPine v2.0	sp_v2.0_unigene16400	5/26

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan endotransglycosylase/hydrolase precursor XTH-30 [Populus tremula]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		78%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		78%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		78%
Blast2go	Glycosaminoglycan degradation	00531		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	78%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	78%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg:

Fln protein: MARCEGGRIMCWWVLRMVMLCSLVMGCHCATFHDLFYPSWALDHVMSQGELLQLKLDPASGAGFASKSTYIFGKVNGQIKLVPGDSAGTVTAFYMSSQGAEHDEFDFEFLGNISGQPYTVQTNVYSKGSGNREQRMFLWFDPTVDFHSYSFLWNRQQVVFFVDDVPIRVFRNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGRVKTDWNHAPFVSTYKNFSIDACEASSNTSCSSWWDAPAYASLDAKQRRKLKWVQEEYITYDYCKDSARFATPPAECSA*

Protein Length: 284

Fln nts: AATGTGTTTACTTCAACTTTCTTACATTTCATTAGTTTTGATAAACGTACGTGTCAAGACTGGCA_-_ATGGCAAGATGCGAAGGAGGGCGTATCATGTGCTGGTGGGTTCTCAGAATGGTAATGCTGTGTAGCCTGGTAATGGGATGCCATTGTGCAACCTTCCACGATTTATTCTATCCAAGTTGGGCTCTTGATCATGTAATGTCCCAAGGGGAGTTGCTCCAGCTCAAGCTCGATCCCGCTTCTGGTGCAGGGTTTGCTTCCAAGAGCACATACATTTTCGGAAAAGTGAATGGGCAAATTAAACTCGTTCCTGGAGACTCTGCTGGCACAGTTACTGCTTTCTATATGTCTTCCCAAGGGGCCGAGCACGATGAATTTGACTTTGAATTTTTGGGTAACATTTCTGGACAGCCATACACTGTGCAGACCAATGTTTATTCAAAGGGGAGTGGTAATAGGGAGCAGCGTATGTTCTTATGGTTTGACCCCACTGTGGATTTCCATTCCTACTCCTTTCTCTGGAATCGTCAGCAAGTTGTTTTCTTTGTGGACGATGTGCCGATCCGGGTTTTTCGTAACAATGAGAAAGTGGGAGTTCCGTATCCTCAATCTCAACCAATGGGCGTATACTCGTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCGCGTAAAGACCGATTGGAACCACGCACCTTTCGTTTCAACATACAAGAATTTCAGCATTGATGCATGTGAAGCTTCCTCGAACACGAGCTGCTCTTCGTGGTGGGACGCGCCTGCTTACGCCTCGCTTGACGCAAAGCAGAGGCGGAAACTGAAGTGGGTACAAGAGGAATACATAACTTACGATTACTGCAAAGATTCAGCTAGGTTTGCCACGCCTCCAGCAGAATGTAGTGCGTAA___AGTAGCCTCTCTTTATTCGCATCATGTCGCGATCATATAAATAATAATATATTTCTAAATCTATTAGATTTCATTCCTTTCAGTTTGTAGATGGTCATCACACACATT

Fln Alignment:

Contig12285___MARCEGGRIMCWWVL--RMVMLCSLVMGCHCATFHDLFYPSWALDHVMSQGELLQLKLDPASGAGFASKSTYIFGKVNGQIKLVPGDSAGTVTAFYMSSQGAEHDEFDFEFLGNISGQPYTVQTNVYSKGSGNREQRMFLWFDPTVDFHSYSFLWNRQQVVFFVDDVPIRVFRNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGRVKTDWNHAPFVSTYKNFSIDACEASSNTSCSSWWDAPAYASLDAKQRRKLKWVQEEYITYDYCKDSARFATPPAEC
D5A9T0__________________VGREEGGRIMHWPCVLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAEC

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
336		83	16		0.994512
337			83	16	0.994512
485	85			14	0.993533
515	20		80		0.995493
516	75	25			0.996473
519			75	25	0.996473
526		66		33	0.997452
527	33		66		0.997452
532			66	33	0.997452
553	66		33		0.997452
556		66		33	0.997452
568	66		33		0.997452
609	11		88		0.923564
611	11			88	0.923564
612			88	11	0.923564
620	87		12		0.992554
622	14		85		0.993533
658	14		85		0.993533
659			71	28	1.0
805	12	87			0.992554
806	87	12			0.992554
808		87		12	0.992554
836	16		83		0.994512
838	16	83			0.994512
839		83		16	0.994512
840	83			16	0.994512
913		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain