SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12281

Length: 1125 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12281

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24001	4/20
SustainPine v2.0	sp_v2.0_unigene31060	15/20

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVW2

Fln msg: STOP codon was not found. Distance to subject end: 8 aas,

Fln protein: MAPARVESLALSGLAAIPAEYVRPVEERPTECVLNLKGGNEAEGPQIPVVDVAGWDSADEEIKKEIGRQVAEASRSWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGRQIRKLVTKILATLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDAVIGPMKEIVDENNPPLFPAKTFQQHTDHKLFKKAQAQAEAQA

Protein Length: 353

Fln nts: GACACCACATTGCTATTTATTGCTCTCTTCGTTCTAAAAGGATTGCTGAATTCTAGTTTCTAGTTATC_-_ATGGCACCAGCACGAGTGGAGAGCCTGGCATTGAGCGGCCTGGCCGCTATTCCTGCCGAGTACGTGAGACCAGTGGAGGAGAGGCCTACTGAGTGCGTTCTCAACTTGAAAGGAGGAAACGAAGCCGAAGGTCCGCAGATTCCGGTGGTAGACGTTGCCGGATGGGATTCTGCCGACGAGGAGATCAAGAAGGAGATCGGGCGTCAGGTGGCGGAGGCGAGCAGATCGTGGGGAGTGATGCAGCTGCTGAACCACGGCATATCTGAGATTCTGATAGAGCGGCTTCAGGCAGCCGGGAAGGCGTTCTTCGATCTCCCTGTTGAAGAGAAAGAGAAGTACGCGAATGACCACGCAGCGGGGAAGATAGCGGGGTACGGCTCCAAGCTCGCCAACAACGCCAGCGGTCAGCTTGAATGGGAAGATTACTATTTCCACCTGCTATGGCCTGAACAGCGCAGAGACATGACCACCTGGCCGAAGCACCCCCAAGAATACATCGAGGTGACAGACGCTTACGGTCGGCAGATACGGAAGCTTGTGACCAAAATCTTGGCCACTCTTTCGTTGGATCTGGGCGTGGAGGAAGACAGAATGGAGCGCGTGCTCGGCGGCGAAAATCTCGAAATGCAACTGAAAATAAATTACTATCCACGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATCAGCGCACTCACATTTCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTTCAAAGACGGCAAATGGGTTACCGCCAAATGCATTCCGGGCGCCCTCATCGTCCACATTGGCGACCAAGTAGAGATTTTGAGCAACGGGAAATTCAAGAGCGGGCTGCACAGAGGACTGGTCAACAAAGAGAAGGTGAGGATTTCTTGGGCTGTGTTCTGTGATCCGCCAAAGGATGCGGTGATCGGACCCATGAAGGAGATAGTGGACGAGAACAATCCTCCGTTGTTTCCGGCGAAGACCTTCCAACAGCACACCGATCATAAGCTGTTCAAGAAGGCCCAAGCCCAGGCGGAGGCCCAAGCCA

Fln Alignment:

Contig12281___MAPARVESLALSGLAAIPAEYVRPVEERPTECVLNLKGGNEAEGPQIPVVDVAGWDSADEEIKKEIGRQVAEASRSWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGRQIRKLVTKILATLSLDLGVEEDRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDAVIGPMKEIVDENNPPLFPAKTFQQHTDHKLFKK
A9NVW2__________________MAPARVESLALSGLAAIPPEYVRPVEERPTECVLKVKGV-EDEGPQIPVVDIAGWDSADEEIKKEIGRQVAKASREWGVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFTSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDESNPPLFPAKTFKEHTDHKLFKK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
511	33			66	0.997452
512			66	33	0.997452
514		66		33	0.997452
628			42	57	1.0
664			85	14	0.993533
682		83		16	0.994512
702	25			75	0.996473
703		25	50		0.995533
705	50	25		25	0.995533
706	75			25	0.996473
707	66			33	0.997452
892	75		25		0.996473
893			75	25	0.996473
1021		33	66		0.997452
1023		33		66	0.997452
1024	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain