SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12270

Length: 1157 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12270 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5974	10/25
SustainPine v2.0	sp_v2.0_unigene24623	2/25
SustainPine v2.0	sp_v2.0_unigene47426	1/25
SustainPine v2.0	sp_v2.0_unigene70404	2/25
SustainPine v2.0	sp_v2.0_unigene83476	1/25

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Overlapping hits, possible frame ERROR between 109 and 102, your sequence is shorter than subject: 205 - 363

Fln protein: MYLGHLHYFLGLQVLQSREGISLSQSKYSCDLLxxxxHMEDCKPAPSPFQSGVKLSVTCTSPEVDATLYRQLVGKLLYLTHTRPDLSFVVGLVARFMQNPRESHWKAAKRILRYVRGTVQFGIHYSAEAAPLLVGFTDSDWAGDPDDRKSTAGYVFTLGSGPITWACKKQGAISLSSAEAEYRGAVEASKEALWLRQILSEFGF*

Protein Length: 206

Fln nts: AATGTACTTAGGACACTTGCATTATTTTCTTGGTCTTCAAGTCTTGCAATCCAGGGAGGGTATTTCGCTTTCCCAGTCCAAGTATTCTTGTGATCTTCTAxxxxxxxxxxxxCACATGGAAGACTGTAAGCCAGCCCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCACTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAGCTTGTAGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGTTGTTGGCCTTGTTGCTCGGTTTATGCAAAACCCCCGTGAAAGTCATTGGAAAGCAGCTAAAAGAATACTTCGTTATGTTCGAGGTACAGTTCAGTTTGGGATTCATTATAGTGCCGAAGCAGCTCCTCTATTGGTTGGTTTCACTGATTCTGATTGGGCTGGTGACCCTGATGATCGGAAGTCTACTGCAGGTTATGTCTTCACTCTTGGTTCAGGACCTATTACATGGGCTTGTAAGAAACAAGGTGCCATTTCTCTTTCTTCAGCAGAAGCAGAGTATCGTGGTGCCGTGGAAGCTAGTAAGGAAGCCTTGTGGCTTCGTCAGATCCTATCAGAGTTTGGCTTTTAGCAGCAGCATCCGACTACACTTTGGTGTGATAATCAAAGTGCCATTCAACTATGCAAAGATCCAGTCCAACATCAGCGTAGCAAACACATTGAACTACACATGCACTTCATCAGAAAGCTCATTCATGACCATGTTCTTGAAGTGCAATATTGTTCAACTGATGATCAGGTTGCAGACATCTTCTACAAAGGCTCTCATAGAGGCGAAGTTCACTAAACTTCGATATATGCTTGGAGTTCAGGAAGTTGTCACTAAGGGGGGATAGGCTCTAGTGCCTCCTTCCTTCTCCTATTGTGTCATATTTGTAAATCCTTCAATCCTATCCCAAGTTGTTCTTAAGGGGGGATGTTAGGATATTCCGACACATAGGAATAGTTAAGTTCAACTTGGTCTAGTATAGGGTTCGGTAAAGTGTGTTTCTTTACTGTGTGCATTTTGTAACTTACAATCCGACGGTCACGATATGTAGTGATCCGATGGTTCATTCTCTCCTCGGTATTATCGACACTTGATCCATGGCTTGACACTCGATTGGTCCATGAG

Fln Alignment:

Contig12270___LGHLHYFLGLQVLQSREGISLSQSKYSCDLLxxxHMEDCKPAPSPFQSGVKLSVTCTSPEVDATLYRQLVGKLLYLTHTRPDLSFVVGLVARFMQNPRESHWKAAKRILRYVRGTVQFGIHYSAEAAPLLVGFTDSDWAGDPDDRKSTAGYVFTLGS
B8LKV8__________________LGLMNYFLGIEVTQKDKGIFICQSKYARDVLxxxRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYSTSNNLQLVGYTDSDFAGSIDDRKSTSGYAFHLGT

SNPs (tot: 114)

Position	A %	C %	G %	T %	Probability
304	33	66			0.997452
305	33	66			0.997452
309	66			33	0.997452
316		33	66		0.997452
321	33			66	0.997452
348	66		33		0.997452
378		66		33	0.997452
388	14		85		0.993533
389	14			85	0.993533
392	57		28		1.0
393	85			14	0.993533
403	85			14	0.993533
407		85		14	0.993533
420	85		14		0.993533
421	14			85	0.993533
422	28		71		1.0
427	83		16		0.994512
431		16		83	0.994512
432	14			85	0.993533
433	14	85			0.993533
435			85	14	0.993533
447		14	85		0.993533
452			85	14	0.993533
465	16		83		0.994512
466		50		50	1.0
470	16		83		0.994512
471		83		16	0.994512
473	16		83		0.994512
477		16		83	0.994512
480	33		66		1.0
498		33		66	1.0
501	83		16		0.994512
506	50	50			1.0
512	16		83		0.994512
518		83	16		0.994512
524	83		16		0.994512
534	16	83			0.994512
535	16		83		0.994512
540		83		16	0.994512
543		83		16	0.994512
544		16		83	0.994512
548		40	60		1.0
551	75		25		0.996473
552	25		75		0.996473
553		75		25	0.996473
560		75		25	0.996473
564		50		50	1.0
567	25		75		0.996473
570		75		25	0.996473
580		75	25		0.996473
584	75		25		0.996473
599		75		25	0.996473
603	25	50		25	1.0
605		75		25	0.996473
606	25		75		0.996473
607	50		50		1.0
609	50		50		1.0
633	50	25		25	0.995533
660	33		66		1.0
668	66		33		0.997452
673	66		33		0.997452
681	33			66	0.997452
696		33	66		0.997452
705	33		33	33	0.997753
706	33		66		1.0
709	33		66		0.997452
725		66		33	0.997452
819		66		33	1.0
820	66		33		1.0
838	66	33			1.0
842	16		83		0.994512
847		83		16	0.994512
860		16		83	0.994512
862			16	83	0.994512
870			83	16	0.994512
873		16		83	0.994512
878		66		33	1.0
885		33		66	1.0
894		50		50	1.0
895	83		16		0.994512
896	66		33		1.0
914		83		16	0.994512
916	66			33	1.0
943	28		14	57	1.0
949		42		57	1.0
953		85		14	0.993533
955	14		85		0.993533
962			85	14	0.993533
975		85		14	0.993533
979	42		57		1.0
980	28		71		1.0
990	14			85	0.993533
991		28	71		1.0
993		71		28	1.0
1004	42		57		1.0
1008		85		14	0.993533
1012		71		28	1.0
1014	14		85		0.993533
1019	14		85		0.993533
1020		14	85		0.993533
1022			83	16	0.994512
1023	83			16	0.994512
1027	20		80		0.995493
1029		80		20	0.995493
1031			60	40	1.0
1037		60		40	1.0
1054	60		40		1.0
1057	20		80		0.995493
1061	20			80	0.995493
1063		20	80		0.995493
1065	80			20	0.995493
1066			40	60	1.0
1073	25		75		0.996473
1075	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain