SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12268

Length: 1142 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12268

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25152	67/73
SustainPine v2.0	sp_v2.0_unigene61190	3/73
SustainPine v2.0	sp_v2.0_unigene66738	1/73

Source	Descriptions	Term	Type	Identity
AutoFact	D-ribulose-5-phosphate-3-epimerase n=2 Tax=Arabidopsis RepID=Q9SAU2_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ribulose-phosphate 3- chloroplastic-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Pentose and glucuronate interconversions	00040	90%
Blast2go	Carbon fixation in photosynthetic organisms	00710	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	90%
Blast2go	response to nematode	GO:0009624	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	ribulose-phosphate 3-epimerase activity	GO:0004750	Molecular Function	90%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	90%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	stromule	GO:0010319	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Ribulose-phosphate 3-epimerase	IPR000056	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP17

Fln msg:

Fln protein: MSTAATSICATVAMVGSQSTHSMGVCRSPFWGKKHNMAFACPQLANSSRKVLSTVKASSRVDKFSKTDIIVSPSILSANFATLGDQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPITDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKKPTPVAA*

Protein Length: 294

Fln nts: AAATTTAAGCATGGTACCTTAACGTCAGAGAACGAGGCGAGGC_-_ATGTCAACAGCAGCGACATCAATATGCGCCACGGTCGCCATGGTGGGTTCTCAGAGCACCCATTCTATGGGTGTCTGCCGTAGTCCGTTCTGGGGAAAGAAGCATAACATGGCCTTTGCATGCCCCCAATTGGCGAACTCTTCAAGGAAAGTTCTCTCTACAGTGAAGGCATCTTCCCGAGTTGACAAGTTCTCCAAAACTGACATCATTGTCTCTCCTTCTATTCTTTCTGCAAATTTTGCAACATTAGGTGACCAGGTCAAAGCTGTCGAGTTGGCAGGTTGCGATTGGGTTCATGTTGATGTTATGGATGGGCGTTTTGTGCCAAATATTACCATTGGACCTCTGGTGGTGGCTGCATTACGACCCATAACAGATTTGCCACTGGATGTACATTTGATGATTGTTGAACCGGAACAACGTGTACCAGATTTTATCAAGGCTGGTGCAGACATTGTTAGTGTCCACTGTGAGCAATCTTCCACTATCCATTTGCACCGAACAGTAAATCAGATCAAGTCTCTTGGAGCGAAAGCTGGAGTGGTATTGAACCCAGCAACTCCTTTAAGTTGTATAGAATATGTTCTTGATGTGGTAGACTTGGTCTTAATTATGTCAGTCAATCCCGGCTTTGGTGGGCAGAGCTTTATAGAAAGTCAAGTGAAGAAAATCTCAGACCTAAGGAGAATGTGTGCGGAGAGGGGCGTGAACCCATGGATTGAGGTGGATGGTGGTGTTACTCCCTCAAATGCCTACAAGGTTATTGAAGCTGGGGCCAATGCGCTGGTGGCGGGATCTGCAGTATTTGGAGCAAAAGATTATGCTGAAGCTATTAAGGGCATCAAGACCAGTAAGAAGCCAACACCAGTTGCAGCATGA___GACCAGTTTTTAATAAGTCGACTTTTATGCAGTATATGGTTCCGATTTTATCGTCAGTTTAGCAGATCGATCTCTTGTTCTGCCCTGAAACAAGCCAGAACTGATGTGAAGGGTCACTAGTTGCCATTCTGTGGCAAGTGTAATATTATTTATTATTTTTCATTATCCATGTAACTTGCAAAATCACACGAATAAGAATGCCTACAAATAAGAATACATT

Fln Alignment:

Contig12268___MSTAATSICATVAMVGSQSTHSMGVCRSPFWGKKHNMAFACPQLANSSRKVLSTVKASSRVDKFSKTDIIVSPSILSANFATLGDQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPITDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKKPTPVAA
A9NP17__________________MSTAATSICATAAMLGSQSTHSVGVCQSPFWGKKHNMAFACPQLATSSRKVLPTVKASSRVDKFSKTDIIVSPSILSANFATLGEQVKAVELAGCDWVHVDVMDGRFVPNITIGPLVVAALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLSCIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAERGVNPWIEVDGGVTPSNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPTPVAA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
160		66		33	0.997452
635	10		89		0.999919
638	5		83	11	0.999887
722		21	78		1.0
724		78		21	1.0
725		78		21	1.0
732		18	81		0.999994
734	81			18	0.999994
873	72	27			1.0
891	90			10	0.90298
894		88		11	0.923564
895		88		11	0.923564
942			85	14	0.993533
963	11		88		0.923564
964		11	88		0.923564
965	11			88	0.923564
973		28		71	1.0
996		14		85	0.993533
997	14	85			0.993533
999		85		14	0.993533
1085	20			60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain