SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12262

Length: 783 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12262

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15460	17/84
SustainPine v2.0	sp_v2.0_unigene16398	1/84
SustainPine v2.0	sp_v2.0_unigene23881	1/84
SustainPine v2.0	sp_v2.0_unigene28091	19/84
SustainPine v2.0	sp_v2.0_unigene60263	43/84
SustainPine v2.0	sp_v2.0_unigene61328	1/84
SustainPine v2.0	sp_v2.0_unigene79391	1/84

Source	Descriptions	Term	Type	Identity
AutoFact	Antimicrobial peptide 1 n=2 Tax=Pinus RepID=Q71QE0_PINSY	-	-	94%
FL-Next	tr=Antimicrobial peptide 3; Pinus sylvestris (Scots pine).	-	-	100%
Blast2go	af410953_1antimicrobial peptide 2	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Antimicrobial/protein inhibitor, gamma-crystallin-like	IPR015791	-	0.0	-
Sma3	Antimicrobial protein MiAMP1	IPR015201	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
116		90	10		0.999898
247		20		80	0.999996
251			20	80	0.999996
253			22	77	0.999999
289			75	25	1.0
321	11		88		0.923564
324			88	11	0.923564
325		88		11	0.923564
335	12			87	0.992554
336		12	87		0.992554
337	12		87		0.992554
338	87			12	0.992554
339	87			12	0.992554
365		14		85	0.993533
382			10	90	0.90298
383	90			10	0.90298
428	11			88	0.923564
430	11	88			0.923564
431		88		11	0.923564
432	77			11	0.968132
465	14	85			0.993533
467	14		85		0.993533
468		85		14	0.993533
512	16	83			0.994512
516	83			16	0.994512
549	25			75	0.996473
552			75	25	0.996473
554	6			93	0.99903
555	6	3	90		0.996531
565	3		48	48	1.0
582	11		88		1.0
600		61		38	1.0
604			38	61	1.0
606	38	61			1.0
608		25		75	1.0
612		25		62	1.0
617		75		25	0.996473
623		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain