SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12238

Length: 560 nt

UniGene Fasta

>biog3_v1.0_unigene12238
AATGTGTTTTACTGAAAAAGCCATTAAAGTAATTATGCTTGCTCAGGAGGAAGCAAGACGCCTTGGACACAACTTTGTAGGTACAGAGCAGATACTGTTAGGTCTTATTGGTGAGGGAACAGGCATTGCAGCCAAAGTATTGAAGTCTATGGGGATTAATCTTAAGGAGGCTCGGATTGAGGTTGAGAAAGTTATTGGTAGAGGCAGCGGATTTGTTGCTGTGGAAATTCCATTCACTCCCAGAGCAAAGCGTGTATTGGAACTGTCATTGGAGGAAGCCAGACAACTTGGCCACAGTTACATAGGATCTGAGCACCTGCTTTTGGGATTACTAAGGGAGGGTGAAGGTGTTGCAGCTCGGGTGCTTGAAAATCTTGGAGCAGAACCGAGTAACATTCGTACGCAAGTAGTTCGCATGGTGGGAGAAAATAGAGATGATGATAGAGCTGTGGTCGGACCTGGAAGCGGCAGTAACAAGACTCCAACACTTGAAGAGTATGGAACGAATTTGACTAAGTTGGCAGAGGAGGGAAAGCTTGATCCAGTGGTTGGAAGGCAGC

Ace file of the UniGene biog3_v1.0_unigene12238

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18829	3/12
SustainPine v2.0	sp_v2.0_unigene28467	9/12

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC	-	-	74%
FL-Next	sp=Chaperone protein ClpC, chloroplastic; Pisum sativum (Garden pea).	-	-	90%
Blast2go	chaperone protein chloroplastic-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	89%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	89%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	89%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P35100

Fln msg: Distance to subject end: 644 aas, your sequence is shorter than subject: 186 - 922

Fln protein: MCFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKEARIEVEKVIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHSYIGSEHLLLGLLREGEGVAARVLENLGAEPSNIRTQVVRMVGENRDDDRAVVGPGSGSNKTPTLEEYGTNLTKLAEEGKLDPVVGRQ

Protein Length: 187

Fln nts: AATGTGTTTTACTGAAAAAGCCATTAAAGTAATTATGCTTGCTCAGGAGGAAGCAAGACGCCTTGGACACAACTTTGTAGGTACAGAGCAGATACTGTTAGGTCTTATTGGTGAGGGAACAGGCATTGCAGCCAAAGTATTGAAGTCTATGGGGATTAATCTTAAGGAGGCTCGGATTGAGGTTGAGAAAGTTATTGGTAGAGGCAGCGGATTTGTTGCTGTGGAAATTCCATTCACTCCCAGAGCAAAGCGTGTATTGGAACTGTCATTGGAGGAAGCCAGACAACTTGGCCACAGTTACATAGGATCTGAGCACCTGCTTTTGGGATTACTAAGGGAGGGTGAAGGTGTTGCAGCTCGGGTGCTTGAAAATCTTGGAGCAGAACCGAGTAACATTCGTACGCAAGTAGTTCGCATGGTGGGAGAAAATAGAGATGATGATAGAGCTGTGGTCGGACCTGGAAGCGGCAGTAACAAGACTCCAACACTTGAAGAGTATGGAACGAATTTGACTAAGTTGGCAGAGGAGGGAAAGCTTGATCCAGTGGTTGGAAGGCAGC

Fln Alignment:

Contig12238___FTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKEARIEVEKVIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHSYIGSXXXXXXXXXXXXXVAARVLENLGAEPSNIRTQVVRMVGENRDDDRAVVGPGSGSNKTPTLEEYGTNLTKLAEEGKLDPVVGRQ
P35100__________________FTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
95	33			66	0.997452
96	66			33	0.997452
97		66	33		0.997452
101	16			83	0.994512
103			83	16	0.994512
352	20		80		0.995493
353	20			80	0.995493
356		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain