SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12229

Length: 532 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12229

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23066	18/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GASA n=1 Tax=Fagus sylvatica RepID=Q0VYL5_FAGSY	-	-	7.0e-34	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	gibberellin-regulated protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
6	66		33		0.997452
28	16		83		0.994512
31		83		16	0.994512
241	11		88		0.923564
242		11	88		0.923564
244	88			11	0.923564
245			88	11	0.923564
289	11		88		0.923564
291	11		88		0.923564
328	16	83			0.994512
330	16			83	0.994512
331			83	16	0.994512
389	25		75		0.996473
390	75	25			0.996473
392			75	25	0.996473
414	33			66	0.997452
415		33		66	0.997452
416	33		66		0.997452
418	66			33	0.997452
429			80	20	0.995493
430	80		20		0.995493
458	16			83	0.994512
459			83	16	0.994512
461	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain