SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12226

Length: 1332 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12226

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24247	154/155

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=GTP-binding nuclear protein Ran-A1 gb\|AAA73563.1\| GTP-binding protein [Nicotiana tabacum]	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ran-family small gtpase	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3		IPR018210	-	-
Sma3	Ran GTPase	IPR002041	-	-
Sma3		IPR013753	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L3

Fln msg:

Fln protein: MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFFCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYEADLAAAAAQPLPDDDDDAFDN*

Protein Length: 223

Fln nts: TCAACGCAGAGTACGCGTGTATCTGAAGGACCGGGCGGATTATTCTTATTTCTTCTTTGGCCTTTCAATTATAATCGGACTTGGAGGGTATTTGGTTAGCAAACGCCCTTTATATCTTCATTCTGTCAGTTACAACGCCTTTCATAACAGGCTCTTCCCAAATTCCATTCAAGTATCAACCCGTCCTTCGCTTCGTCTTCTCTTCATCGATCGTCTGGGCTATAATTATTACTGATCATTCTCATTTCTTTCATTTCTCTAGCA_-_ATGGCTCTTCCTGGCCAGCAGGCAGATTGCCCGAGCTTCAAGCTTGTCATTGTTGGCGATGGAGGCACTGGGAAGACGACATTTGTCAAACGCCATCTTACAGGAGAATTTGAGAAGAAATATGAGCCCACAATCGGGGTTGAGGTTCACCCTCTCGATTTTTTCACTAATTGCGGGAAGATTCGATTTTTCTGTTGGGACACGGCTGGTCAAGAGAAGTTCGGTGGCCTGCGAGATGGTTACTACATTCATGGCCAGTGTGCTATAATCATGTTTGATGTTACTGCACGTTTGACTTACAAAAATGTACCAACCTGGCACAGAGATCTTTGCAGGGTATGTGAGAATATTCCTATTGTTCTTTGTGGGAACAAGGTTGATGTGAAGAACAGACAAGTTAAAGCCAAGCAAGTTACTTTCCACAGAAAAAAGAATCTTCAATATTATGAAATATCGGCTAAAAGTAATTACAATTTTGAGAAGCCATATCTTTATCTTGCACGGAAACTCTCTGGGGATCCCAACCTTCATTTCGTGGAGTCACCTGCTCTTGCTCCACCAGAGGTTCAGATTGATATGGCTACACAACTGCAGTATGAGGCAGATCTTGCAGCTGCTGCAGCACAGCCTCTCCCTGATGACGACGATGATGCTTTTGACAATTGA___GAGCTAAATCTAGCTATGGTAGGGTTCTGTTCTTAGATAACGACATAGTTTAATACTTTTATCGGCTATGTTGTTCAAATATCATCAGTTGTCTTTCTCAATGAAGCCCTTTTTTTGTCAATTTTGATTTTTTAAGTGTGAGCCAATGACTCAAGTGGGATGCCAATTTAACAATCTGGCATTCTAGTTTATTCTCTCATGGCATAGTCTTGTAAACAAAGCATGCTGATTTTGCTTAACTACAAAATTCGCTTAGCTGTGTATGACTTTTGACTTGTTGCTTTACCACGATACAACTATATGTTTAATTATCATTTTGCAAGGGCTGAGGGAATATTTGATGTTGTTTCATAGCAGATATCTTCCTCAATGATAATGGCATGTTCTTGATAGTTGTACATT

Fln Alignment:

Contig12226___MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFFCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYE
A9P2L3__________________MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
89	20			80	0.995493
92			20	80	0.995493
205	12	87			0.992554
208		87		12	0.992554
485	20			80	0.995493
487	20		80		0.995493
488			80	20	0.995493
1174	89			10	0.999919
1176	88			11	0.999937
1198	11			88	0.999952
1209	11			88	0.999952
1210		11	88		0.999952
1211	11	88			0.999952
1272		14		85	0.993533
1273	14		85		0.993533
1281	60		40		1.0
1319	25		75		0.996473
1322		25	25	50	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain