SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12222

Length: 960 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12222 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15300	91/91

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S15 n=4 Tax=Spermatophyta RepID=RS15_ELAOL	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	0.0	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	0.0	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
270	11			88	0.923564
273		77	22		0.999999
321		10		90	0.90298
322	10		90		0.90298
324			90	10	0.90298
369		12	87		0.992554
371	87			12	0.992554
798		90		9	0.999842
923		90		10	0.90298
949	16		66		0.988813
950		16		83	0.994512
953		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain