SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12219

Length: 1280 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12219

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5974	26/39
SustainPine v2.0	sp_v2.0_unigene15789	4/39

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 218 aas, your sequence is shorter than subject: 277 - 407

Fln protein: MALSACGCQSSRSGYALNVSSSSHSHEWLIDSGASYHMAKNKAMFSSLNDCNTKNIYVGDDRSLNVVGTGTVHLDNGQFNDVLCVPTLSCNLLSVYQITHSGEGKIVEFSPHDVVIKDLKDPKQVLATGIADDSTRLYKFHNFGSSNLPSVFVAHNDEVSKLWHERFGHLNYRSLQHLCKENMVTGLPMVSCRDGVCSGCVLGKHHRDSFEKRASWHATGPLQLVHSDLCGPLPVASFSGCKYFLTFIDDFSRRTWVYFLKLKSEVFNIFLAFKAFV

Protein Length: 278

Fln nts: AATGTCATTCTACAAGGGAATGTTTCATTTGTCAAGGAAAAGACTTATACAAACCCCCTTCCTTTGACTCTTTTTGTGATTCTTTAATAAGAGAACAAGAAAAACTCTTACATCTTGGTCTTCTTAATCTTGGAAACTCTTCCAAGAAAGCGTTAGCCGCCCAGCAGCAACCAAATTCAAAGAATCCTAAGAAGTCATATCCTAAAAAGAATGGTCCTAAACCAAACAAGGGTCCTAAGCAAACTCAACCTCAAAATGAAAGATCATTTCAGCAAAATGATAAGACCAATAAAACAATGGAAGAAGACTGATAGACATTGCAACTTTTGTAATCGAGATGGCCACTTAGAATCCAAATGCTTTAAGAAGATGGAAACCTTGGAAGCAGCAATGAAGAAGCATAACATCCATTTGGAGCACTCTTCAACTTCAACTTCATCTTCAGGGA_-_ATGGCACTTTCTGCATGTGGTTGTCAATCATCTCGGTCTGGTTATGCATTAAATGTATCTTCTTCTTCTCATTCTCATGAGTGGCTCATTGATTCTGGAGCTTCTTATCACATGGCCAAAAACAAAGCCATGTTTTCTTCTTTAAATGATTGTAACACCAAAAATATATATGTTGGTGATGATAGATCTCTTAATGTTGTAGGGACTGGAACTGTTCATCTAGACAATGGTCAATTTAATGATGTATTATGTGTTCCAACCTTATCCTGCAACCTTCTATCTGTATATCAGATAACTCATTCAGGTGAAGGTAAAATTGTTGAATTTTCACCTCATGATGTTGTAATCAAGGATCTAAAAGATCCTAAACAGGTTCTAGCTACTGGTATTGCTGATGATTCCACAAGGTTGTATAAGTTTCACAACTTTGGGTCATCAAATCTTCCCTCAGTCTTTGTTGCTCATAATGATGAAGTGAGCAAACTGTGGCATGAGCGATTTGGTCACTTAAACTATCGCTCCCTTCAGCATCTATGTAAAGAAAATATGGTCACAGGTCTTCCTATGGTATCTTGCAGAGATGGTGTTTGTTCTGGATGTGTACTCGGAAAACATCATCGGGACAGCTTTGAAAAACGTGCCTCTTGGCACGCCACCGGCCCTTTACAGCTTGTGCATAGTGATTTATGTGGTCCTCTTCCTGTTGCTTCATTCTCTGGCTGCAAATATTTCTTAACTTTCATTGATGATTTCTCCAGGCGCACTTGGGTTTACTTCTTAAAACTCAAGAGTGAGGTGTTTAACATATTTTTGGCCTTCAAGGCCTTTGTTG

Fln Alignment:

Contig12219___LCVPTLSCNLLSVYQITHSGEGKIVEFSPHDVVIKDLKDPKQVLATGIADDSTRLYKFHNFGSSNLPSVFVAHNDEVSKLWHERFGHLNYRSLQHLCKENMVTGLPMVSCRDGVCSGCVLGKHHRDSFEKRASWHATGPLQLVHSDLCGPLPVASFSGCKYFLTFIDDFSRRTWVYFLKLKSEVFNIFLAFKAFV
B8LKX7__________________MLVPNLKSNLLSVNQIAN--QGYKVEFYKDKCLIKDINSNYKVVASGYVENG--LYKFGRFTSNE--KALVAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFV

SNPs (tot: 101)

Position	A %	C %	G %	T %	Probability
152	33		66		1.0
191	16		83		0.994512
196		83	16		0.994512
217		80		20	0.995493
248	60		40		1.0
254	50	25		25	0.995533
269	25	25		50	0.995533
272			75	25	0.996473
273		75		25	0.996473
282	66		33		0.997452
323		25		75	0.996473
336	14	85			0.993533
342	16		83		0.994512
347	16	83			0.994512
356		50		33	1.0
368	20		80		0.995493
378	20		80		0.995493
392	83		16		0.994512
399	80			20	0.995493
401	20		80		0.995493
422		80		20	0.995493
423	25			75	0.996473
430		80		20	0.995493
431			20	80	0.995493
463	16		83		0.994512
467		16	83		0.994512
469		33	66		1.0
470	16		66	16	0.988813
473	16		83		0.994512
474	16			83	0.994512
485	33		66		1.0
499		40		60	1.0
509		80		20	0.995493
511			20	80	0.995493
534	14		85		0.993533
535	14	85			0.993533
548			85	14	0.993533
551		85		14	0.993533
552		14		85	0.993533
562	85			14	0.993533
568	85			14	0.993533
573		85		14	0.993533
574	83		16		0.994512
594	40		60		1.0
599		20	80		0.995493
613	25		75		0.996473
657		75		25	0.996473
665	12		87		0.992554
673	88			11	0.923564
674	11		88		0.923564
675	88			11	0.923564
676		88	11		0.923564
677	88			11	0.923564
685	11		88		0.923564
695	11		88		0.923564
696	22		11		0.999999
697		11		88	0.923564
699	11			88	0.923564
700		11		88	0.923564
708	14	85			0.993533
709		85		14	0.993533
711	85			14	0.993533
712		85		14	0.993533
726	16	83			0.994512
735			83	16	0.994512
768	80	20			0.995493
783	16	83			0.994512
784		83		16	0.994512
785			16	83	0.994512
786		83		16	0.994512
820	80	20			0.995493
825	20		80		0.995493
826		20		80	0.995493
827	20			80	0.995493
828		80		20	0.995493
851		25		75	0.996473
890	75			25	0.996473
948		87		12	0.992554
1016		25		75	0.996473
1073		20	80		0.995493
1104		80		20	0.995493
1105			80	20	0.995493
1112	14	14	71		0.984337
1116		14		85	0.993533
1120		85		14	0.993533
1122	14		85		0.993533
1128	14		85		0.993533
1132	85			14	0.993533
1133	16		83		0.994512
1137		16		83	0.994512
1149	16			83	0.994512
1178	83	16			0.994512
1179	83		16		0.994512
1182	16			83	0.994512
1193	20			80	0.995493
1224	50			50	1.0
1245		25		75	0.996473
1248	50		50		1.0
1251	25		75		0.996473
1259		33		66	0.997452
1261			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
506	517	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain