SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12215

Length: 1315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12215 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1623	1/53
SustainPine v2.0	sp_v2.0_unigene21973	52/53

Source	Descriptions	Term	Type	Identity
AutoFact	SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_850809.1\| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_974767.1\| SCP1-like small phosphatase 5 [Arabidopsis thaliana] ref\|NP_001078572.1\| SCP1-like small phosphatase 5 [Arabidopsis	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	scp1-like small phosphatase 5	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	72%
Blast2go	CTD phosphatase activity	GO:0008420	Molecular Function	72%
Blast2go	cytoplasm	GO:0005737	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dullard phosphatase domain, eukaryotic	IPR011948	-	0.0	-
Sma3	NLI interacting factor	IPR004274	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQY3

Fln msg: your sequence is shorter than subject: 369 - 517

Fln protein: NVKRNDNRESCEEHKRSVIDTSPNSGDIRKETLIRLSTDVVEAVQGSETNSGNLPDDDLDGSQTAFDVAQNGIEWPLDDQNASDVHRHGSESVQEGLLSADGASLFLAMQQTKLLKCNDEASQESRVADEDDEIDDFDPYLFIKNLPNLSEVVSSFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCLFVEGNYLKDLTVLGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDCALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEHPSMGNRGNPFDRHSRECV*

Protein Length: 370

Fln nts: AATGTGAAAAGAAATGATAACAGGGAGTCATGTGAAGAACATAAAAGGAGTGTAATAGATACTTCTCCAAATTCAGGTGACATACGAAAGGAAACTTTGATCAGACTTTCTACTGATGTGGTAGAAGCAGTGCAAGGGTCTGAGACAAATTCGGGTAATCTTCCTGATGATGATCTTGATGGTTCGCAAACAGCTTTTGATGTGGCTCAGAATGGCATTGAGTGGCCTCTTGATGATCAAAATGCATCAGATGTTCATAGGCATGGTTCAGAATCAGTGCAGGAAGGTTTGTTAAGTGCAGATGGGGCATCCTTGTTTCTAGCAATGCAGCAAACTAAATTGTTGAAGTGCAATGACGAGGCCAGCCAAGAATCCAGAGTTGCTGATGAAGATGATGAAATTGATGATTTTGATCCATATTTATTCATAAAGAATTTACCAAACCTCTCTGAAGTGGTTTCATCTTTTCGGCCCATGTTGCTACCGAAACAAACACGGAGATGCCCGCCTATCACACTTGTCTTAGATTTGGATGAGACCCTTGTGCATTCAACACTGGAGCATTGTGACGATGCAGACTTCACATTCCCAGTGCATTTTAATTTGAAAGAGCATACAGTGTATGTACGATGCAGGCCTCATCTCCAGCTGTTTATGGATAGGGTTGCAGATATGTTTGAAATTATTGTATTCACAGCTAGTCAAAGCGTCTATGCGGAGCAACTCTTAAATGTACTAGATCCAAAACGGAAGCTCATTCGTCACCGTGTCTACCGTGAATCATGCCTCTTTGTAGAGGGTAATTATCTGAAGGATTTGACAGTTTTGGGTCGTGATCTTGCACAAGTTGCCATTATTGACAACTCACCACAGGCCTTTGGATTCCAAGTAGACAATGGTATTCCTATTGAGAGCTGGTTTGATGATCGTTCAGACTGCGCTTTAGTTACGTTGCTTCCTTTCCTCGAGTCATTAGTAGGACTCAATGATGTCCGTCCAATCATTGCAAAGAAATTTAATCTTCGTGAGAAAATAGCAGCAGCAGAACATCCATCAATGGGAAACAGAGGGAACCCATTCGATCGGCACTCGAGAGAATGTGTATGA___GCTGCAGTTTCTATATTCATTTTAAACTAATAGCAATTTTGATTTAGAGTTCCTTCATTATCCTTTGTATTTATTCCATTTAAACTTATTAGTCAACTTGCCTTGTATATGGATATTCCATGACGTAGACTATCATTTCACTGTATGCATTTTAACAATCACTTTTAATATGAAATTTGCAGCATTCTCTTCCGGTTCAAAGAACATT

Fln Alignment:

Contig12215___KRNDNRESCEEHKRSVIDTSPNSGDIRKETLIRLSTDVVEAVQGSETNSGNLPDDDLDGSQTAFDVAQNGIEWPLDDQNASDVHRHGSESVQEGLLSADGASLFLAMQQTKLLKCNDEASQESRVAXXXXXXXXXDPYLFIKNLPNLSEVVSSFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCLFVEGNYLKDLTVLGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDCALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEHPSMGNRGNPFDRHSRECV
B8LQY3__________________KRNENGDSFEEHKRSVIDTPPTSGNLQKESLTRLSTDMAEAVQGSVTNSGNLPDDELVGSQTAFDATQNGIEWPLVDQNTSIDHRHGSEPVQEGLLSLDGTSLFLAMQQTKLLKCNDEASQESRVADEDDEIDDFDPYLFIKNLPDLSEVVSSFRPMLLPKQTRRCPPITLVLDLDETLVHSTLEHCDDADFTFPVHFNLKEHTVYVRCRPHLQLFMDRVADMFEIIVFTASQSVYAEQLLNVLDPKRKLIRHRVYRESCVFVEGNYLKDLTILGRDLAQVAIIDNSPQAFGFQVDNGIPIESWFDDRSDYALVTLLPFLESLVGLNDVRPIIAKKFNLREKIAAAEYPSMGNRGNPFDRHSRECV

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
188	90	10			0.90298
190	90			10	0.90298
322	20	80			0.995493
323			80	20	0.995493
325	80			20	0.995493
352	80			20	0.995493
402	14		85		0.993533
403	16	83			0.994512
405		66	16		0.988813
406	16			83	0.994512
409	83			16	0.994512
550		87		12	0.992554
703	10			90	0.90298
704		10	90		0.90298
705	10	90			0.90298
707		88		11	0.923564
870		28	71		1.0
872			71	28	1.0
873			71	28	1.0
884	16			83	0.994512
885	16	83			0.994512
887			16	83	0.994512
888	14			85	0.993533
935	14	85			0.993533
936	85	14			0.993533
938		85		14	0.993533
980	16			83	0.994512
1005		16	83		0.994512
1006	16		83		0.994512
1007	83			16	0.994512
1016	20	80			0.995493
1021		80		20	0.995493
1214	16			83	0.994512
1215		16	83		0.994512
1218		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain