SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12209

Length: 1015 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12209

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25390	32/33

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=11 Tax=Physcomitrella patens RepID=A9S6L2_PHYPA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	90%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL18

Fln msg: your sequence is shorter than subject: 302 - 422

Fln protein: ELQTMRILDQSNVGSLKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYSRMNQRIPLIYVKLYTYQICRSLAYIHAIGVCHRDVKPQNLLVNPHNHQLKLCDFGSAKALVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSMGCVLAELLLGQPLFPGETAIDQLGEIVKILGTPTREEVKCMNPNYNEFGFPQIKAHPWHKIFHKRTPPEAVDLVSRLLQYSPNLRCTALESCIHPFFDELRDPSARLPNGRPLPLLFNFKPQEIKGATPELLQKLIPEHARKQCSHLNPYLANLA*

Protein Length: 303

Fln nts: GAGAGTTGCAGACAATGCGCATTCTAGATCAGTCAAATGTTGGTTCTTTGAAGCATTGTTTCTTTTCTACTACTGATAAGGATGAACTGTACCTTAACTTGGTACTGGAGTATGTCCCAGAGACTGTTTATCGGATAGCAAAACACTATAGTAGGATGAATCAGCGAATCCCCTTGATCTATGTAAAATTATATACATATCAGATTTGCAGGTCATTAGCCTATATTCATGCTATTGGGGTATGCCATAGAGATGTGAAACCTCAAAATCTTCTGGTCAATCCTCACAATCATCAGCTAAAGTTATGTGATTTTGGAAGTGCAAAAGCTCTGGTAAAAGGTGAACCAAATATATCATACATTTGCTCCCGTTATTATAGAGCTCCTGAGCTTATATTTGGAGCCACTGAGTATACTTCTGCTATTGATATCTGGTCCATGGGTTGTGTCTTGGCTGAGCTACTTCTTGGTCAGCCGTTATTTCCAGGCGAGACTGCAATAGATCAGCTAGGAGAGATTGTCAAGATCCTTGGAACTCCAACTCGTGAGGAAGTCAAATGTATGAATCCCAATTATAATGAGTTTGGGTTTCCACAGATTAAGGCTCACCCTTGGCACAAGATTTTCCACAAGCGCACACCTCCAGAAGCTGTAGATCTAGTTTCCAGACTTCTTCAATACTCCCCAAACCTTCGTTGCACTGCTCTTGAATCTTGTATACACCCTTTCTTCGATGAGCTTCGAGATCCCAGTGCTCGCTTGCCCAATGGCCGCCCTCTGCCCCTTCTGTTCAACTTCAAACCACAGGAAATTAAGGGAGCTACTCCTGAGCTTCTTCAGAAGCTGATTCCTGAGCATGCAAGAAAGCAGTGCTCGCATCTCAACCCTTATTTGGCTAATTTGGCATAA___GTCGATGGCCTCATGCAGATTTCTGATTGCTAACAGTGCGTTCTTGTTTGGAATATGGAGGATAAAGAACATATACTTGAGGAGATTTCGGGCCACTCTGTCGAGCA

Fln Alignment:

Contig12209___ELQTMRILDQSNVGSLKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYSRMNQRIPLIYVKLYTYQICRSLAYIHAIGVCHRDVKPQNLLVNPHNHQLKLCDFGSAKALVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSMGCVLAELLLGQPLFPGETAIDQLGEIVKILGTPTREEVKCMNPNYNEFGFPQIKAHPWHKIFHKRTPPEAVDLVSRLLQYSPNLRCTALESCIHPFFDELRDPSARLPNGRPLPLLFNFKPQEIKGATPELLQKLIPEHARKQCSHLNPYLANLA
B8LL18__________________ELQTMRILDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRIPLIYVKLYTYQICRSLAYIHAIGVCHRDVKPQNLLVNPHNHQLKLCDFGSAKALVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSMGCVLAELLLGQPLFPGETAIDQLGEIVKVLGTPTREEVKCMNPNYNEFGFPQIKAHPWHKIFHKRTPPEAVDLVSRLLQYSPNLRCTALESCVHPFFDELRDPNARLPNGRPLPLLFNFKPQEIKGATPELLQKLIPEHARKQCSHLNPYLANLA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
88	14	85			0.993533
197	11	88			0.923564
200	88		11		0.923564
390	12		87		0.992554
391		87		12	0.992554
392			12	87	0.992554
546	20			80	0.995493
547		20	80		0.995493
549			80	20	0.995493
550			80	20	0.995493
621		16	83		0.994512
706	12	87			0.992554
707	12			87	0.992554
784		90		10	0.90298
824		80		20	1.0
983		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain