SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12208

Length: 2045 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12208
AAGCGAAAACAAGGGAAGCATATTCGCTGCGTAGAGAAACAGCCGTAAGGCATATTCTTGGCCTCTCTGGGTTTAGCGGGAATCGATCTCGGCACATCATTGGCATATTCCCGAAGTGACAGATAATAGAAGAGCCATGGTTTGCACGGTACAAGTTGCGAACCCAAGCACGAATGCTAACCCTAAGTCCTTGGCAGGTGACTGGGTCGAGCCTCTCCCCGAGGAATTTGATCCGGTTGAGATATGCGCTCCCTTGCCAGGGACAGATGGGGACGAAAATGGCAGCGTTAGTAGCCGTTCTGATAGTGGCCAAGGTTTTGGAAATGGAGAAAAGAAAGAAATTGTGCTCGGCAGGAATATTCATACGAGCTGCCTTGCGATCACCGAGCCGGATGTCGACGATGAGATTACAGGTGAAAGAGAGGGCTACATGGCCAGTGTTTTAGCCAAGTACCGGCGGAGTCTCGTGGAAAGGACGAAGCACCATCTTGGTTATCCTTACAATCTGGATTTTGATTATGGTGCACTGGCACAGCTGCAACATTTTTCCATTAATAATCTTGGTGACCCTTTTATTGAGAGCAACTATGGAGTACACTCGAGGCAGTTTGAGGTTGGAGTCTTGGACTGGTTTGCCCGCCTTTGGGAACTGGAGAAACATGAGTATTGGGGATACATCACAAATTGTGGTACAGAAGGAAATCTGCATGGTGTTTTAGTCGGGAGAGAGGTTTTTCCGGATGGCATTTTGTATGCATCACGAGAGACTCATTACTCAATTTTCAAAGCAGCAAGGATGTACAGAATGCAATTAGAAAAGGTGGATACACTAATTTCTGGTGAGATTGACTGTGCGGATTTCAAACAGAGGCTGCTTAAAAACAAGGATAAGCCTGCTATTGTCAATGTTAATATTGGGACTACGGTTAAGGGAGCTGTAGATGATTTGGATATGGTGGTTCAGACTCTTGAAGAATCGGGCTTTATGAAAGACCGATTTTATATCCATTGTGACGGGGCTTTATTTGGCTTAATGATGCCCTTTGTGAAGCGGGCACCAAAAGTGAGTTTTAAGAAGCCAATAGGAAGTGTGAGTGTGTCTGGGCATAAGTTTGTTGGATGTCCCATGCCATGCGGTGTGCAAATAACAAGGATCGAGCACATAAATGCCCTTTCAAGGGATGTGGAGTATTTAGCTTCGAGGGATGCCACAATAATGGGAAGTCGCAATGGGCATGCTCCTATATTTCTTTGGTACACCTTGAACCGGAAAGGTTATCGAGGGTTTCAGAAAGAGGTTCAGAAATGCCTTAGAAATGCACATTATTTGAAAGGTCGATTTCGGTCTGCTGGGATTAGCGCAATGTTAAATGAACTGAGCAGCACTGTAGTATTTGAGAGACCACAGGATGAAACTTTTGTCCGCAGGTGGCAGCTTGCCTGCCAGGGAAACATTGCCCATATTGTTGTGATGCCAAATGTAACAATAGAGAAGATAGATTGCTTTGTGGACGAGTTGGTTGAGAATCGACCAAAATGGTTTCCAGATGGGAAGGTTGTGACTCCGTGCATTGCAAATGAGGTTGGTGATGAGAATTGTGCTTGCCTTCAACATAATCATACCTGAGTTATGCAATGTCGGTGAGTTCACTGGCAGGCACATAGTTGGTGATGAGAATTGTGCTCGCCTTAAACATAATCATGCCTACATCGTGCGCCAAGTTCAGTGTCGTATGCCAATTTTCATCTCAACATTGCTGCTACTGATGCATTGCACTCTATTTGAATGTTGGATCGTACTGTGTGCGCAATTTAAGAGCGCAATCTTCCATGTCACCATGGGTTGGGTGACTCATCATATTGTACTTTTTATGCTTAATTCATTTCATTTTAACCACATTCGGAGTTGTCAGTCCATTAATTGTACTGAACAGTGGTTCTTTGATTTGAAATTCTACAAGAAACTGGCAGGATGTCTTGTTATCTCAGTTTAAAATTTAAATAAAGCTGTAAACGTAGTAGTTCGTGCCAATATTATAGACATT

Ace file of the UniGene biog3_v1.0_unigene12208 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17081	202/204

Source	Descriptions	Term	Type	Identity
AutoFact	Group II plp decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9T448_RICCO	-	-	83%
FL-Next	sp=Histidine decarboxylase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	55%
Blast2go	histidine decarboxylase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P54772

Fln msg: your sequence is longer than subject: 497 - 413

Fln protein: MVCTVQVANPSTNANPKSLAGDWVEPLPEEFDPVEICAPLPGTDGDENGSVSSRSDSGQGFGNGEKKEIVLGRNIHTSCLAITEPDVDDEITGEREGYMASVLAKYRRSLVERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKHEYWGYITNCGTEGNLHGVLVGREVFPDGILYASRETHYSIFKAARMYRMQLEKVDTLISGEIDCADFKQRLLKNKDKPAIVNVNIGTTVKGAVDDLDMVVQTLEESGFMKDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRIEHINALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKGRFRSAGISAMLNELSSTVVFERPQDETFVRRWQLACQGNIAHIVVMPNVTIEKIDCFVDELVENRPKWFPDGKVVTPCIANEVGDENCACLQHNHT*

Protein Length: 498

Fln nts: AAGCGAAAACAAGGGAAGCATATTCGCTGCGTAGAGAAACAGCCGTAAGGCATATTCTTGGCCTCTCTGGGTTTAGCGGGAATCGATCTCGGCACATCATTGGCATATTCCCGAAGTGACAGATAATAGAAGAGCC_-_ATGGTTTGCACGGTACAAGTTGCGAACCCAAGCACGAATGCTAACCCTAAGTCCTTGGCAGGTGACTGGGTCGAGCCTCTCCCCGAGGAATTTGATCCGGTTGAGATATGCGCTCCCTTGCCAGGGACAGATGGGGACGAAAATGGCAGCGTTAGTAGCCGTTCTGATAGTGGCCAAGGTTTTGGAAATGGAGAAAAGAAAGAAATTGTGCTCGGCAGGAATATTCATACGAGCTGCCTTGCGATCACCGAGCCGGATGTCGACGATGAGATTACAGGTGAAAGAGAGGGCTACATGGCCAGTGTTTTAGCCAAGTACCGGCGGAGTCTCGTGGAAAGGACGAAGCACCATCTTGGTTATCCTTACAATCTGGATTTTGATTATGGTGCACTGGCACAGCTGCAACATTTTTCCATTAATAATCTTGGTGACCCTTTTATTGAGAGCAACTATGGAGTACACTCGAGGCAGTTTGAGGTTGGAGTCTTGGACTGGTTTGCCCGCCTTTGGGAACTGGAGAAACATGAGTATTGGGGATACATCACAAATTGTGGTACAGAAGGAAATCTGCATGGTGTTTTAGTCGGGAGAGAGGTTTTTCCGGATGGCATTTTGTATGCATCACGAGAGACTCATTACTCAATTTTCAAAGCAGCAAGGATGTACAGAATGCAATTAGAAAAGGTGGATACACTAATTTCTGGTGAGATTGACTGTGCGGATTTCAAACAGAGGCTGCTTAAAAACAAGGATAAGCCTGCTATTGTCAATGTTAATATTGGGACTACGGTTAAGGGAGCTGTAGATGATTTGGATATGGTGGTTCAGACTCTTGAAGAATCGGGCTTTATGAAAGACCGATTTTATATCCATTGTGACGGGGCTTTATTTGGCTTAATGATGCCCTTTGTGAAGCGGGCACCAAAAGTGAGTTTTAAGAAGCCAATAGGAAGTGTGAGTGTGTCTGGGCATAAGTTTGTTGGATGTCCCATGCCATGCGGTGTGCAAATAACAAGGATCGAGCACATAAATGCCCTTTCAAGGGATGTGGAGTATTTAGCTTCGAGGGATGCCACAATAATGGGAAGTCGCAATGGGCATGCTCCTATATTTCTTTGGTACACCTTGAACCGGAAAGGTTATCGAGGGTTTCAGAAAGAGGTTCAGAAATGCCTTAGAAATGCACATTATTTGAAAGGTCGATTTCGGTCTGCTGGGATTAGCGCAATGTTAAATGAACTGAGCAGCACTGTAGTATTTGAGAGACCACAGGATGAAACTTTTGTCCGCAGGTGGCAGCTTGCCTGCCAGGGAAACATTGCCCATATTGTTGTGATGCCAAATGTAACAATAGAGAAGATAGATTGCTTTGTGGACGAGTTGGTTGAGAATCGACCAAAATGGTTTCCAGATGGGAAGGTTGTGACTCCGTGCATTGCAAATGAGGTTGGTGATGAGAATTGTGCTTGCCTTCAACATAATCATACCTGA___GTTATGCAATGTCGGTGAGTTCACTGGCAGGCACATAGTTGGTGATGAGAATTGTGCTCGCCTTAAACATAATCATGCCTACATCGTGCGCCAAGTTCAGTGTCGTATGCCAATTTTCATCTCAACATTGCTGCTACTGATGCATTGCACTCTATTTGAATGTTGGATCGTACTGTGTGCGCAATTTAAGAGCGCAATCTTCCATGTCACCATGGGTTGGGTGACTCATCATATTGTACTTTTTATGCTTAATTCATTTCATTTTAACCACATTCGGAGTTGTCAGTCCATTAATTGTACTGAACAGTGGTTCTTTGATTTGAAATTCTACAAGAAACTGGCAGGATGTCTTGTTATCTCAGTTTAAAATTTAAATAAAGCTGTAAACGTAGTAGTTCGTGCCAATATTATAGACATT

Fln Alignment:

Contig12208___EPDVDDEITGEREGYMASVLAKYRRSLVERTKHHLGYPYNLDFDYGA-LAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKHEYWGYITNCGTEGNLHGVLVGR-EVFPDGILYASRETHYSIFKAARMYRMQLEKVDTLISGEIDCADFKQRLLKNKDKPAIVNVNIGTTVKGAVDDLDMVVQTLEESGFMKDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRIEHINALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKGRFRSAGISAMLNELSSTVVFERPQDETFVRRWQLACQGNIAHIVVMPNVTIEKIDCFVDELVENRP-KWFPDGKVVTPCIANEVGDENCAC
P54772__________________ESDIKNETSFQE---LDMILTQYLETLSERKKYHIGYPINMCYEHHATLAPLLQFHLNNCGDPFTQHPTDFHSKDFEVAVLDWFAQLWEIEKDEYWGYITSGGTEGNLHGFWLGRRELLPNGYLYASKDSHYSIFKAARMYRMELQTINTLVNGEIDYEDLQSKLLVNKNKPAIININIGTTFKGAIDDLDFVIQTLENCGYSNDNYYIHCDRALCGLILPFIKHAKKITFKKPIGSISISGHKFLGCPMSCGVQITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERNYKWYQDVKALPPCLADDLA-LNCMC

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
727	10		84	5	0.999846
845	14	85			0.999981
846	14	85			0.999981
848		85	14		0.999981
890		86		13	0.999973
1090		90		10	1.0
1091		90		10	1.0
1114	11	88			1.0
1118	11	88			1.0
1212		11	88		0.999937
1214	88			11	0.999952
1215	88			11	0.999952
1260	13		86		0.999973
1430	10			90	0.999898
1485		90		10	0.999898
1486		90		10	0.999898
1604		42		57	1.0
1735		85		14	0.993533
1766	16		83		0.994512
1829	16		83		0.994512
1830		14	85		0.993533
1831	14		85		0.993533
1832			85	14	0.993533
1833	85			14	0.993533
1908	87			12	0.992554
1909		87	12		0.992554
1922	71		28		1.0
2002		14		85	0.993533
2003	85	14			0.993533
2012	16			83	0.994512
2014	16			83	0.994512
2015		83		16	0.994512
2019	20		80		0.995493
2023			80	20	0.995493
2024		80		20	0.995493
2036	25	75			0.996473
2038	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain