SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12196

Length: 476 nt

UniGene Fasta

>biog3_v1.0_unigene12196
CCACCTTCATACGCATGCTGGCTGGATTATTAAAACCAGATACAATCGAAAACTCAGAGGTGGAGATACCTGAATTTAATGTGTCATACAAGCCACAGAAGATAAGCCCAAAGTTTCAGAATTCTGTAAGGATTTTATTACACCAAAAGATTCGAGATTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAACAATTATTGGAACAGGAAGTTGTAAATCTTTCAGGTGGAGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTCATTGATGAACCAAGTGCGTACTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTTATAAAGCGATTTATTCTTCATGCCAAGAAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGACAGGGTTATAGTATATGATGGGAAACCCTCT

Ace file of the UniGene biog3_v1.0_unigene12196

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27730	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter E family member 2 n=13 Tax=Spermatophyta RepID=AB2E_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	rnase l inhibitor-like protein	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RNase L inhibitor RLI, possible metal-binding domain	IPR007209	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, ABCE	IPR013283	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR96

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 158 - 605

Fln protein: TFIRMLAGLLKPDTIENSEVEIPEFNVSYKPQKISPKFQNSVRILLHQKIRDSYTHPQFTSDVMKPLQIEQLLEQEVVNLSGGELQRVAICLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYDGKPS

Protein Length: 159

Fln nts: CCACCTTCATACGCATGCTGGCTGGATTATTAAAACCAGATACAATCGAAAACTCAGAGGTGGAGATACCTGAATTTAATGTGTCATACAAGCCACAGAAGATAAGCCCAAAGTTTCAGAATTCTGTAAGGATTTTATTACACCAAAAGATTCGAGATTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAACAATTATTGGAACAGGAAGTTGTAAATCTTTCAGGTGGAGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTCATTGATGAACCAAGTGCGTACTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTTATAAAGCGATTTATTCTTCATGCCAAGAAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGACAGGGTTATAGTATATGATGGGAAACCCTCT

Fln Alignment:

Contig12196___TFIRMLAGLLKPDTIENSEVEIPEFNVSYKPQKISPKFQNSVRILLHQKIRDSYTHPQFTSDVMKPLQIEQLLEQEVVNLSGGELQRVAICLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYDGKPS
B8LR96__________________TFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
224	33		66	0.997452
227		66	33	0.997452
228		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain