SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12195

Length: 715 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12195 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9652	9/11
SustainPine v2.0	sp_v2.0_unigene78330	2/11

Source	Descriptions	Term	Type	Identity
AutoFact	starch branching enzyme [Ipomoea batatas]	-	-	47%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic; Zea mays (Maize).	-	-	75%
Blast2go	starch branching enzyme ii	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	0.0	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	62%
Blast2go	Metabolic pathways	01100		0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	62%
Blast2go	1,4-alpha-glucan branching enzyme activity	GO:0003844	Molecular Function	62%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	FBD	IPR006566	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
303	25	75			0.996473
305		75		25	0.996473
306	75		25		0.996473
307	75			25	0.996473
380	80			20	0.995493
465	14	85			0.993533
466		14	85		0.993533
468			85	14	0.993533
469		85		14	0.993533
542	14		85		0.993533
545		85		14	0.993533
552	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain