SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12178

Length: 1380 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12178

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8034	133/137
SustainPine v2.0	sp_v2.0_unigene81129	1/137
SustainPine v2.0	sp_v2.0_unigene81413	1/137

Source	Descriptions	Term	Type	Identity
AutoFact	Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY	-	-	96%
FL-Next	tr=Putative chlorophyll A-B binding protein of LHCI type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	96%
Blast2go	chlorophyll a-b binding protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	90%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	90%
Blast2go	metal ion binding	GO:0046872	Molecular Function	90%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	90%
Blast2go	photosystem II	GO:0009523	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%
Blast2go	photosystem I	GO:0009522	Cellular Component	90%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8VXA6

Fln msg:

Fln protein: MASGAAVVCASSSVAAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAAQTERPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK*

Protein Length: 280

Fln nts: CGGGGGATGCATGAAGTTGTGAGGTACGCTGCTACACATACATAGAGTGGACTTCTTTGAAAGAAAGAGGGTCTGCAGTCGATC_-_ATGGCATCTGGTGCCGCTGTTGTCTGTGCATCTTCCAGTGTTGCAGCAGCTGTGGTTGTTGCTCCTTCATCCAGCTCCCAGAAGACTATACTTGCCAACAATGTGGGAGCAGCCAAGGCTTCCTTCTTGGTAGGCAGGGCTGTGAGTCTGAGACAGTCCAAAGCTGCCATGCCCAGGAGAGCAGCTGTGATTGTCTCTGAAGCAGCACAAACAGAGAGGCCTCTGTGGTTTCCTGGCAGTACTCCCCCACCCTGGCTTGATGGCAGTCTTCCAGGAGACTTCGGGTTCGATCCACTCGGACTAGGGTCAGACCCTGAGACCCTCAAATGGATGGTACAGTCTGAGCTAGTTCATTGCAGATGGGCAATGCTGGGGGCAGCTGGAATCTTCATTCCAGAGCTGTTGACTAAGTTGGGGATCCTCAACACCCCTTCCTGGTACACTGCAGGAGAGCTGGAGTATTTCACAGATAAAACAACTCTCTTCGTGGTGGAGATGATATTCCTTGGATGGGCCGAGGGCCGCAGATGGGCAGATATACTTAAGCCCGGCTCAGTCAACACCGATCCAATCTTCCCCAACAACAAGCTGACTGGAACTGATGTTGGGTACCCTGGTGGGTTGTGGTTTGACCCTCTTGGCTGGGGCTCTGGCTCTCCTGCAAAAATCAAGGAGCTGAGGACCAAGGAAATCAAGAATGGACGATTGGCCATGTTGGCTGTCATGGGAGCTTGGTTCCAAGCAGAGTACACTGGCACTGGTCCTATTGACAACTTATTGGCTCACCTTGCAGACCCTGGACATGCCACTGTATTTGCGGCCTTCTCATCAAAATGA___ACTGACGTGGCTTCTGGAATTCCATCTGTAACATGATTTCATCTGAAACTCCTTGGGAAAAATTATGTGTATAGCTCCCCAAAGACTAATGTTAAAAGAGCATCACTGTTATTTGTCTGTTATTTTAAAGCTATTTGTGTGGAGAATATTTGTGCTTTGTGTGTGTTAGTATGATGTAAATGTAGTTTTCTGAAGTTGGATTTTGTCTTGTAAGATTCTGGCTACAAAGTTCAGTTAATGAATAGAATGGGGAACATGCTGGAGAAGGGCAAAACAATGATGAATACAATGTTTGGACTTTTACCTAGGAAAGCTAAGGGATGAAACATATCCATATTCTCTTGCAGTTCATGAAACCATCAACTGAACTGAGGTGTGCAACATCAGCTGTCTTCAGAAATCCTGCAATGGTTTTCACGGTCATGTACAAATATTAACAGGCAGTTTCATCTCCAGCAA

Fln Alignment:

Contig12178___QKTILANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAAQTERPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK
Q8VXA6__________________QKTVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSSK

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
99	20	80			0.995493
101	20		80		0.995493
102		80		20	0.995493
128	25		75		0.996473
131			75	25	0.996473
132		75		25	0.996473
405	14	71			0.984337
406		85		14	0.993533
407		85	14		0.993533
648	7	92			0.999664
653		92		7	0.999664
680			90	9	0.999872
697	13	86			0.999973
699	13	86			0.999973
701			86	13	0.999973
719	16	83			0.999991
722	16	83			0.999991
729			77	11	0.968132
730	12		87		0.992554
731		12	87		0.992554
732	25		75		1.0
733		87		12	0.992554
734	12			87	0.992554
735		85		14	0.993533
760		25	75		0.996473
761	25	75			0.996473
763			75	25	0.996473
785			66	33	0.997452
926	16		83		0.994512
928		83		16	0.994512
1071	10			90	0.90298
1092		11		88	0.923564
1095			88	11	0.923564
1101	87	12			0.992554
1191	11		88		0.923564
1194	88			11	0.923564
1195	88			11	0.923564
1220	22	77			0.999999
1247	88			11	0.923564
1251		11		88	0.923564
1254		87		12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain