SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12169

Length: 1394 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12169

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23690	91/91

Source	Descriptions	Term	Type	Identity
AutoFact	Late embryogenesis abundant-like protein (Fragment) n=19 Tax=Picea sitchensis RepID=E0ZAL6_PICSI	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	late embryogenesis abundant-like protein	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Root cap	IPR009646	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR1

Fln msg:

Fln protein: MAFKWALVSVACCLVAGAAQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSAPGLKISRLQDANSVTVHVAESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK*

Protein Length: 322

Fln nts: ACAGTGTAATAGTTCGCTGAGCAGAAA_-_ATGGCTTTCAAGTGGGCTCTAGTTTCTGTTGCCTGTTGCCTTGTTGCAGGAGCAGCCCAAGTTAGCGCATGGAAGGCTAGTTGCCAGGATCCTTACTATGGGGGTTGCTATGGGATTGCTCATGCCTGCCCTCCTGGTTGTCCCAGGGTCTGTGAAGTGGATTGCAAGCTCTGCAAACCAATTTGCGCCTGTGACAAGCCGGGCGCAGTGTGCCAGGACCCCAGATTCATAGGCGGGGACGGCATTATGTTCTACTTTCATGGCAAGAAGGACCGGGATTTCTGCCTTGTCTCCGAGACCAATCTACAGATCAATGGGCATTTCATTGGCAAGAGCAAAGAGGGGGGTTTAAAGCGCGATTTCACGTGGGTGCAGTCCATAGGTGTGCAGTTCGATTCCCACAAACTCTACTTGGGCGCTAACAAGGTTGCCAAGTGGGACGATGCCCGCGACGAGCTCTCTCTCTTCCTGGACAACGAGCCGATAGTCCTCCCGCCGGGCCGTGGCGCCGAGTGGGAGTCCACGTCGGCGCCCGGGCTCAAGATCAGCCGCCTCCAGGACGCAAACAGCGTCACCGTCCATGTGGCCGAGAGCGTCACCATCACGGCCCGAGTGGTACCCATCACCGCAGAGGAGTCGAGAATCCACAAATATGAGATCACCGAAGACGACTGCTTCGCCCATCTGGAGCTCAACTTCAAGTTCTTGGCTCTCAGTCCCCATGTGACCGGGGTCCTGGGGCAGACCTATTCGGCCGGTTTCAAGAGCCCCGTGAAGGTCGGCGTGGCCATGCCCATCATGGGAGGAGAAGATAAGTTTGCGGCCTCGGGTCTCTTTGATGCTGACTGCAAGGTCACAAGGTTTGCAGGTCGCGCGATCGAATCTGTGGCCGGTCACAACTTCCCTGAAGTTGCCTGCGGTAGTGGCAGCGCAGCTGGACGTGGTATTGTGTGCCGGAAGTAG___CACAGTTTTCTGTAACAATATCCAGCAGTATCTAACAATAAATTCTGCTTTCCTGTACTAGTATTATAGCTTTTACTTTATAATAATAATATGTAGTGGATACTGTACTCTAAGGCCATTTCTAATGATCTGTGCTTAACAATAGGGGTGGAATATGATCTGTCTAGGTGATTAGCTACGAGGTTCAGCAAAGGCTGCTTTGTAAGTTTGTATAATGTATCTGAGAACACTCCTGGTGTTCTGTGTTTCATAGTCTGCATAGGGTATGCTCAGCCTTGGTGGTCAGCTATGAGGTTTGTTCAGCAAAGGCTGAAAGGTAGGAGTTACTTTGAATAAGGTTGGATGCTTTTAATTGTATAAGTACAGTTGAAATCTTAATAATGCATCATTATCCACATTACATT

Fln Alignment:

Contig12169___MAFKWALVSVACCLVAGAAQVSAWKASCQDPYYGGCYGIAHACPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLQINGHFIGKSKEGGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLFLDNEPIVLPPGRGAEWESTSAPGLKISRLQDANSVTVHVAESVTITARVVPITAEESRIHKYEITEDDCFAHLELNFKFLALSPHVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASGLFDADCKVTRFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK
A9NSR1__________________MACKWVLFAVACCLVA-AAQVRAWKASCQDPYYGSCYGIAHVCPPGCPRVCEVDCKLCKPICACDKPGAVCQDPRFIGGDGIMFYFHGKKDRDFCLVSETNLHINGHFIGKSKKQGLKRDFTWVQSIGVQFDSHKLYLGANKVAKWDDARDELSLLLDDQPIVLPPGRGADWESASAPGLKISRLQDANSVTVEVAESFVITARVVPITAEESRIHKYEITEDDCFAHLELNFKFFALSPQVTGVLGQTYSAGFKSPVKVGVAMPIMGGEDKFAASDLFAADCKVARFAGRAIESVAGHNFPEVACGSGSAAGRGIVCRK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
21	16		83		0.994512
23	80			20	0.995493
25	83			16	0.994512
107			83	16	0.994512
734	11			88	0.923564
735	11		88		0.923564
736			88	11	0.923564
737		88	11		0.923564
1100	30	60			1.0
1101		40		60	1.0
1103	60			40	1.0
1104			66	33	1.0
1356			87	12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1070	1081	ATA ATA ATA ATA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain