SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12160

Length: 1162 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12160

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16292	96/97

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa Japonica Group]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	26s proteasome regulatory particle non-atpase subunit	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	94%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	94%
Blast2go	proteasome complex	GO:0000502	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKL6

Fln msg:

Fln protein: MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPITAAAGS*

Protein Length: 312

Fln nts: GGCGGAGAGCGAAAACTATTCGTTTTAAGCGGTTTCGGGTTCGAATCTGAGAAGCAGCAACTCGCCTCAAACAAACGGCAGAGGAGAGGAAAG_-_ATGGATGTGATAAAGACGCAGCAGATATCGGCGAGGGCAATAGAGAAAGTGATAGTGCATCCTTTGGTGTTGCTCAGCATCGTGGACAACTACAACAGAGTAGCGAGAGACACAAGGAAACGAGTTATTGGCGTGCTGCTGGGAACCAGCTTCCGCGGAGTCGTAGATGTAACTAATAGCTATGCAGTGCCTTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTTTGGATCACAACTATCATGAATCTATGTTTGAAATGTTCAAGCGGATTAATGCAAAGGAGCATGTGGTAGGATGGTATAGCACTGGTCCAAAACTTCGGGAAAATGACTTGGATGTGCATGAGTTGTTCCACGACTATGTGCCCAATCCTGTGCTTGTCATTATTGATGTCCAACCGAAGGAGCTGGGGATTCCTACCAAAGCATACTATGCTGTGGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGGTATTTGTGCATGTGCCTTCTGAAATTTGTGCTCATGAAGTTGAGGAAATAGGTGTGGAGCACTTGCTAAGGGATGTCAAGGACACAACTATCAGTACTCTTGCAACAGAGGTGAGCGGGAAATTGACAGCATTGAAGGGTCTCGAGGCTCGGCTGAGGGAGATTCATGGATACTTGGATCTAGTAGTTGATGGAAGGCTTCCACTTAACCATGAAATTCTGTACCATCTTCAGGATGTATTCAATCTATTACCTAACTTGAATGTTAATGAGTTAGTGAAGGCTTTTGCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTGTCCTCACTTATTCGGAGTGTCATTGCCATGCATAATCTCATTAACAACAAGATGCTAAACAAGGAACATGAGAAACTTGCAGATGCTTCATCCTCACCCATAACAGCCGCTGCAGGGAGTTAA___GTAGATGCTTCTGATTCCTTGGTAGTAAGAAAGATTGTAGCTGGATTCTTTTCAGAGGTTGTCTTTTGCAGCTCAAAATATTGGAGCTTCTATGAAAATTTTTGTGTACTGCCCATTTTTACCTCAATGCCACATT

Fln Alignment:

Contig12160___MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDXXXXXXXXXXXXXXKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT
A9NKL6__________________MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGIVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHQYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
39	50		50		1.0
40	25			75	0.996473
41			25	75	0.996473
42		50	25	25	0.995533
43			75	25	0.996473
111	16		83		0.994512
114			83	16	0.994512
115		83		16	0.994512
469	11	88			0.999937
470	11	88			0.999937
918		12	87		0.999964
920			87	12	0.999964
1040		25	75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain