SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12156

Length: 2113 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12156
TTCGTTCAAGGCATTGAAGTGCGGGAACAAGATTAATGGCTAGATCGGAGTTTTTTTGCTCGGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTATAGAAGCGTAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCGTGGCATTCTCGATCCCCATGTCTTCCAAGCAACAGCAACCAAGTTTGGAGAATGTCCAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCACCCAATTTCACAACCTCTTGAATAATCCCAGATTTCAAGAAGAGGTCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCTGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGACAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCGTTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCACTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCGGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTGGTGAGCACTGTACTCCAGTATTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAGCCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTAGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGCTCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAATTTTCGAAGCAGCAGAGGGAGAACCTGACCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGTGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTGACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAATGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACACTGTGGTCAAGTGGTTGTGGACACACATGACCCCACAGCAGAAATCAAGCTCTCCCATCTCCTATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTATTCCGTTTTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCACTCACTCACATATATATAACAGTACTGGGATACATT

Ace file of the UniGene biog3_v1.0_unigene12156 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5903	75/129
SustainPine v2.0	sp_v2.0_unigene17234	28/129
SustainPine v2.0	sp_v2.0_unigene32199	23/129

Source	Descriptions	Term	Type	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	enhanced disease susceptibility 1	-	-	55%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	55%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	55%
Blast2go	Metabolic pathways	01100		0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	55%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: atg_distance in limit (1-15): atg_distance = 12, Unexpected STOP codon in 5 prime region,

Fln protein: MARSEFFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVAIAFRGILDPHVFQATATKFGECPSGFLEWLKDGNNQPAFLHQGSLTQFHNLLNNPRFQEEVLLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPDKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAELVSTVLQYCSAVANYNSATNMSPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEALGLGIQNCPARLALRAAGQFSKQQRENLTKLENEVKGKIEVAIKEIEEYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTDYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLMLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAGNSTFNTVVKWLWTHMTPQQKSSSPISYVIGRHPELMN*

Protein Length: 639

Fln nts: TTCGTTCAAGGCATTGAAGTGCGGGAACAAGATTA_-_ATGGCTAGATCGGAGTTTTTTTGCTCGGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTATAGAAGCGTAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCGTGGCATTCTCGATCCCCATGTCTTCCAAGCAACAGCAACCAAGTTTGGAGAATGTCCAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCACCCAATTTCACAACCTCTTGAATAATCCCAGATTTCAAGAAGAGGTCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCTGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGACAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCGTTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCACTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCGGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTGGTGAGCACTGTACTCCAGTATTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAGCCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTAGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGCTCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAATTTTCGAAGCAGCAGAGGGAGAACCTGACCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGTGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTGACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAATGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACACTGTGGTCAAGTGGTTGTGGACACACATGACCCCACAGCAGAAATCAAGCTCTCCCATCTCCTATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTATTCCGTTTTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCACTCACTCACATATATATAACAGTACTGGGATACATT

Fln Alignment:

Contig12156___TRLMARSE-FFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVAIAFRGILDPHVFQATATKFGECPSGFLEWLKDGNNQPAFLHQGSLTQFHNLLNNPRFQEEVLLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPDKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAELVSTVLQYCSAVANYNSATNMSPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEALGLGIQNCPARLALRAAGQFSKQQRENLTKLENEVKGKIEVAIKEIEEYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTDYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLMLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAG--NSTFNTVVKWLWTHMTPQQKSSSPISYVIGRHPELMN
A9NVM4__________________SRLMDGSQPLFSDSSLLGFCKLSHSFYRSGGDDPSYLRANISNDTVAFAFRGILDPRDFQATASKFGDSP---LEWMKDGNNQSASVHQGSLKQFLHLWNTSRLQEEARQEYEGGKTVVFTGHSMGGGIASLAALWMLNSQQQ--PGKPKSVFCITFGFPLIGDGTLARIVRRKGWTDQFCHVVLGHDVFSRVLLAPCISVREPLESLLPYLKRYPENVGDLLGSTDTTMEEALPEGSAELVSTVLQHSSAIANYSSATNMSPNNPLMAAVKSLVKLSPYRPFGHYVFCSRSGGIRTENHFAVLSILYYTLQ-------ISDGNCEEFILEHVGYGNILPSALQNTVKLNELSDLPLSEAGSNYQDSRTAQLEALGLGIQNCPARLSLRAAGQVLKQQRENVPKLENEVRGKIETAINEIEEYRRQCFRNGIGYYDSFKNKQNRSDFDANLNRLKLAGWWDEIIPMVDKDELPEDFQCSEEWITLGTHYRLLVEPLDIANYYRLGKNEDSGPYLKNGRPRRYTTLQKWLKEIEVTKQLQPSPTGIDQPTVLTQDSCLWAHVEEIACLMRPNNVRDQENLVAELENSVKALIGSNGLSMEELVAGNCNSTFNTVVKWLWTNMNAEKKASSPISYIIGRHPELIN

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
188	33	66			0.997452
189	33	66			0.997452
192		66		33	0.997452
264		66	33		0.997452
265			66	33	0.997452
320	33		66		0.997452
367	66		33		0.997452
372		33	66		0.997452
390		33	66		0.997452
604	20	80			0.995493
607			80	20	0.995493
646	33			66	0.997452
647	33	66			0.997452
648		66		33	0.997452
649	66		33		0.997452
650		66		33	0.997452
662		66		33	0.997452
706	33			66	0.997452
708			33	66	0.997452
709		66		33	0.997452
913	66	33			0.997452
939	25	75			0.996473
940	25			75	0.996473
943		75		25	0.996473
1092		90	10		0.90298
1093		90		10	0.90298
1102	10	90			0.90298
1105	90			10	0.90298
1106			90	10	0.90298
1124	88		11		0.923564
1167	12			87	0.992554
1188	25		75		1.0
1189		75		25	1.0
1190	75		25		1.0
1191	75			25	1.0
1249	12		87		0.992554
1284			75	25	1.0
1285		75		25	1.0
1402	11	88			0.923564
1406			88	11	0.923564
1612	85			14	0.993533
1613		85		14	0.993533
1696	11	88			0.923564
1699	88			11	0.923564
1700			88	11	0.923564
1713		75		12	0.975346
1731			85	14	0.993533
1738	83			16	0.994512
1809	66	33			0.997452
1819	16		83		0.994512
1820		83		16	0.994512
1824		88		11	0.923564
1826	11	88			0.923564
1834			88	11	0.923564
1835	88			11	0.923564
1884			66	33	1.0
1887	14	85			0.993533
1888	85		14		0.993533
1897	88			11	0.923564
1923		12		87	0.992554
1924	12		87		0.992554
1925			87	12	0.992554
1926			87	12	0.992554
1927			85	14	0.993533
1941		85		14	0.993533
1947	16		83		0.994512
2006	16		83		0.994512
2012	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain